PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004516674.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | LBD | ||||||||
Protein Properties | Length: 263aa MW: 29278.7 Da PI: 8.4075 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.3 | 3.7e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC+++p++ p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+ XP_004516674.1 4 SCNGCRVLRKGCSEDCIIRPCLewikcPQSQANATVFLAKFYGRAGLINLINSGPQNLRPAIFRSLLYEACGRIANPIYGSVGFLWSGSWQLCQA 98 6********************************************************************************************** PP DUF260 91 kaelallke 99 +++ +l +e XP_004516674.1 99 AVDSVLKGE 107 *99887766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 4.6E-92 | 1 | 262 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.851 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-25 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSEDCI IRPCLEWIKC PQSQANATVF LAKFYGRAGL INLINSGPQN 60 LRPAIFRSLL YEACGRIANP IYGSVGFLWS GSWQLCQAAV DSVLKGEPIK PITSEAAANE 120 RAPPLMAYDI RHVAKDDNLK ETQQAKTRSR FKRTMKPKAS KKTGSGLVEE KNESESLLSY 180 HCKDNESGVS VETSILFHNE PESKPKMSDR ADENVTDEVG LELRLGIEPV SREEHVVPIK 240 KRKIELKDWG VSCKVELGLE LVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004516674.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147741 | 1e-66 | AC147741.12 Medicago truncatula clone mth2-17b23, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004516674.1 | 0.0 | LOB domain-containing protein 41-like isoform X1 | ||||
Swissprot | Q9M886 | 2e-93 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A1S2Z7Z2 | 0.0 | A0A1S2Z7Z2_CICAR; LOB domain-containing protein 41-like isoform X1 | ||||
STRING | XP_004516674.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 9e-96 | LOB domain-containing protein 41 |