PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004515730.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HD-ZIP

Protein Properties

Length: 762aa MW: 83535.7 Da PI: 5.9461

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004515730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	8.8e-22	55	110	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k XP_004515730.1 55 KKKYHRHTPQQIQELESFFKECPHPDEKQRSDLSKRLGLENKQVKFWFQNRRTQMK 110 79999************************************************999 PP
2	START	179.7	1.7e-56	270	493	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 la +a++el+k+ + ++p+W+kss e +n +e+ ++ ++ + + +ea +++g+++ +++ lve+lld +W+e+++ +a t XP_004515730.1 270 LAIAAMDELIKMSQPDCPLWMKSSeggkEVLNHEEYARSGSP--FtnpkpngYVTEATKETGLLIINSVALVETLLDAD-RWTEMFPcmiaRAVT 361 6789******************666655555555555544..155899999**********************.*********** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169 l+vissg galq+m +e q++splvp R + ++R+++q+ +g+wv+vdvS+d ++ + +++ +++lpSg+++++++ng +k+twv+h XP_004515730.1 362 LDVISSGmggsrnGALQVMHSEIQLPSPLVPvRQYSVLRFCKQHAEGVWVVVDVSIDIGRNTANGNPYMSCRRLPSGCVLQDMPNGLCKITWVDH 456 *********************************************************999*************************** PP EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++ +h+++r+lv+sgla+ga +wvatlqrqce+ XP_004515730.1 457 SQYDESAVHQIYRPLVNSGLAFGAHRWVATLQRQCEC 493 *********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.05E-20	37	112	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-22	45	112	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.977	52	112	IPR001356	Homeobox domain
SMART	SM00389	6.0E-19	54	116	IPR001356	Homeobox domain
CDD	cd00086	2.43E-19	55	112	No hit	No description
Pfam	PF00046	2.4E-19	55	110	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	87	110	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	45.284	260	496	IPR002913	START domain
SuperFamily	SSF55961	7.14E-32	263	493	No hit	No description
CDD	cd08875	6.87E-115	266	492	No hit	No description
SMART	SM00234	9.3E-41	269	493	IPR002913	START domain
Pfam	PF01852	2.6E-48	270	493	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	6.1E-4	373	489	IPR023393	START-like domain
SuperFamily	SSF55961	3.3E-13	512	697	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MEGHGEMGLI GENFDSGLLG RMREDEYESR SGSENFDGAS GDDLDAGDDQ PQNKKKKYHR 60 HTPQQIQELE SFFKECPHPD EKQRSDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENMI 120 LRQENEKLRA ENSVMKEAMA NPICSNCGGP AIPGQISMEE HQIRIENARL KEELTRVCTL 180 ANKFLGRPLS ALANMALPSP NSSLELGIGR NGIVSGSSNF GMSMPMGFNM GDGVMGTPPT 240 HSGMTHSGMR SPMGMMGNDA QQERTMLIDL AIAAMDELIK MSQPDCPLWM KSSEGGKEVL 300 NHEEYARSGS PFTNPKPNGY VTEATKETGL LIINSVALVE TLLDADRWTE MFPCMIARAV 360 TLDVISSGMG GSRNGALQVM HSEIQLPSPL VPVRQYSVLR FCKQHAEGVW VVVDVSIDIG 420 RNTANGNPYM SCRRLPSGCV LQDMPNGLCK ITWVDHSQYD ESAVHQIYRP LVNSGLAFGA 480 HRWVATLQRQ CECLAILMST MPSEDPTAIN QAGRRSMLKL AQRMTDYFWS GVCPSTACKW 540 DILHISNMGN SDMKIMSRKH QDNSGESTSI VLSAATSVWL PVSRQRVFDF LREARLRGEW 600 DVLTGGGPMQ EMVHIPKGQS LGNSVCILRG NNASNGNEGN VLYLQDSWTD SSGSMIVYSP 660 INMQSLNMVM NGGDSSFISL LPSGFSILPD GHSNNNCVGT SNDGSGNGGS DNNDSGGCLL 720 TAGIQMLLNN LQTSKLTMES VDAVNALITC TIQKVKDALG VA

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MEGHGEMGLI GENFDSGLLG RMREDEYESR SGSENFDGAS GDDLDAGDDQ PQNKKKKYHR  60
HTPQQIQELE SFFKECPHPD EKQRSDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENMI  120
LRQENEKLRA ENSVMKEAMA NPICSNCGGP AIPGQISMEE HQIRIENARL KEELTRVCTL  180
ANKFLGRPLS ALANMALPSP NSSLELGIGR NGIVSGSSNF GMSMPMGFNM GDGVMGTPPT  240
HSGMTHSGMR SPMGMMGNDA QQERTMLIDL AIAAMDELIK MSQPDCPLWM KSSEGGKEVL  300
NHEEYARSGS PFTNPKPNGY VTEATKETGL LIINSVALVE TLLDADRWTE MFPCMIARAV  360
TLDVISSGMG GSRNGALQVM HSEIQLPSPL VPVRQYSVLR FCKQHAEGVW VVVDVSIDIG  420
RNTANGNPYM SCRRLPSGCV LQDMPNGLCK ITWVDHSQYD ESAVHQIYRP LVNSGLAFGA  480
HRWVATLQRQ CECLAILMST MPSEDPTAIN QAGRRSMLKL AQRMTDYFWS GVCPSTACKW  540
DILHISNMGN SDMKIMSRKH QDNSGESTSI VLSAATSVWL PVSRQRVFDF LREARLRGEW  600
DVLTGGGPMQ EMVHIPKGQS LGNSVCILRG NNASNGNEGN VLYLQDSWTD SSGSMIVYSP  660
INMQSLNMVM NGGDSSFISL LPSGFSILPD GHSNNNCVGT SNDGSGNGGS DNNDSGGCLL  720
TAGIQMLLNN LQTSKLTMES VDAVNALITC TIQKVKDALG VA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004515730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	1e-35	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004515730.1	0.0	homeobox-leucine zipper protein ROC6-like isoform X1
Refseq	XP_027186734.1	0.0	homeobox-leucine zipper protein ROC6-like isoform X1
Refseq	XP_027186735.1	0.0	homeobox-leucine zipper protein ROC6-like isoform X1
Refseq	XP_027186736.1	0.0	homeobox-leucine zipper protein ROC6-like isoform X1
Swissprot	Q9M2E8	0.0	HDG1_ARATH; Homeobox-leucine zipper protein HDG1
TrEMBL	A0A1S2Z636	0.0	A0A1S2Z636_CICAR; homeobox-leucine zipper protein ROC6-like isoform X1
STRING	XP_004515730.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1192	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Horstman A, et al. AIL and HDG proteins act antagonistically to control cell proliferation. Development, 2015. 142(3): p. 454-64 [PMID:25564655]