PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513973.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 194aa MW: 22546.8 Da PI: 8.044 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 46.8 | 3.7e-15 | 32 | 71 | 8 | 47 |
HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS SRF-TF 8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47 + q +f+kR++g++ K ELSvLC+a+ a+ii s++ k+y XP_004513973.1 32 KDQLSFAKRKQGLFNKVTELSVLCQAKTALIITSKDKKIY 71 4589********************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.4E-10 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 15.755 | 17 | 77 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-8 | 19 | 39 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.03E-16 | 19 | 87 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.1E-13 | 32 | 71 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-8 | 39 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.1E-8 | 54 | 75 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MAFIERNNLA TKPNISRKRK FENIKVEEKF NKDQLSFAKR KQGLFNKVTE LSVLCQAKTA 60 LIITSKDKKI YACGYPNVDT VIRHFLDGQQ NPVDGEKQMM QEEEESVENL RVQYEALQDQ 120 LKEEKKNLQV ITEAQKNGSC FHSWWNDSID DMNLESLEMF KTSLENLKLN LLLSLDEKRI 180 RSSSSTIRNQ IIGL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513973.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513973.1 | 1e-141 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S2Z2Q1 | 1e-140 | A0A1S2Z2Q1_CICAR; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_004513973.1 | 1e-140 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 1e-21 | AGAMOUS-like 62 |