PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004513476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRF | ||||||||
Protein Properties | Length: 352aa MW: 40450.3 Da PI: 7.7668 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.4 | 2.9e-24 | 78 | 121 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e XP_004513476.1 78 DPEPGRCRRTDGKKWRCSKEAYQDSKYCERHMHRGKNRSRKPVE 121 79***************************************987 PP | |||||||
2 | QLQ | 55.4 | 1.9e-19 | 7 | 41 | 2 | 36 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 +FT++Q+q+L++Q+l+yKy+a++ +Pp+Ll+ i+ XP_004513476.1 7 PFTPSQWQELEHQALVYKYMASGISIPPDLLFTIR 41 8******************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.5E-11 | 6 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-14 | 7 | 41 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 21.953 | 7 | 42 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.558 | 78 | 122 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.1E-20 | 79 | 121 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MNKNRFPFTP SQWQELEHQA LVYKYMASGI SIPPDLLFTI RRSFFDSPLI SSTLLPNQTQ 60 QQHFGWNYLQ MGIGRKIDPE PGRCRRTDGK KWRCSKEAYQ DSKYCERHMH RGKNRSRKPV 120 EVFKTTTTNA NANANANANN PSTLTSNNSS LSFDTQQHHH HSHLQHSFLY HHPSSKSSSS 180 TAIVLSSYED NSAPLFLDTN SCSHNNTDYR NRYVYGEKED VDEYAFFKEP SGSSTMKSFS 240 TSSMDRDSWQ LTPLTMSSSS SSSSSRLRSF SSLSNDYSCL QLQSLSEQSK QQEQEKEPQK 300 TVHRFFDEWP HKGREQWLHD LDDKSSTTQL SISIPSSAHD FPTFTSSTHH DD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004513476.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009846 | 1e-58 | AP009846.1 Lotus japonicus genomic DNA, clone: LjT02E24, TM1624a, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004513476.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A1S2Z1T8 | 0.0 | A0A1S2Z1T8_CICAR; growth-regulating factor 1 | ||||
STRING | XP_004513476.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4043 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-51 | growth-regulating factor 5 |