PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004512200.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

ERF

Protein Properties

Length: 225aa MW: 25056.7 Da PI: 6.3983

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004512200.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.3	1.8e-18	60	109	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++++g XP_004512200.1 60 LYRGVRMRQ-WGKWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAAQAIKG 109 69**998.******854...6********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	1.3E-12	59	109	IPR001471	AP2/ERF domain
CDD	cd00018	1.26E-33	59	119	No hit	No description
SuperFamily	SSF54171	1.63E-21	60	118	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.8E-31	60	118	IPR001471	AP2/ERF domain
SMART	SM00380	1.9E-37	60	123	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.787	60	117	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	61	72	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.5E-10	83	99	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEQIVVPFDN EIALTTSISS SKSKGEEVLH DNNNNNNSNS NNNKVKNMKK SCNDGNIHPL 60 YRGVRMRQWG KWVSEIREPK KKSRIWLGTF PTPEMAARAH DVAAQAIKGS SAYLNFPELA 120 DHLPRPATTS PKDIQAAAAK AATMGYLHET QNYYQAQAHD NKKTSNSCLR DEDDTFFDLP 180 DLLVDLNNSS REFNNASTSM PWVVAGAEHP DSGFGLNETF PGEPY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-16	55	117	9	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004512200.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004512200.1	1e-170	ethylene-responsive transcription factor ERF039
Swissprot	Q8LBQ7	2e-49	ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBL	A0A1S2YZ40	1e-168	A0A1S2YZ40_CICAR; ethylene-responsive transcription factor ERF039
STRING	XP_004512200.1	1e-169	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF192	34	263

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16750.1	2e-48	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]