PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510465.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRF
Protein Properties Length: 356aa    MW: 40835.5 Da    PI: 8.3617
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510465.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.82.5e-2576120145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+
  XP_004510465.1  76 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEP 120
                     79****************************************985 PP
2QLQ552.4e-191046137
             QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    s+FT++Q+q+L++Q+l++Ky++ + P+P++L++ i++
  XP_004510465.1 10 SPFTPNQWQELEQQALVFKYMVTGTPIPSDLIFSIKR 46
                    89*******************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.2E-121046IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.9741146IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088801.2E-131144IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.61776120IPR014977WRC domain
PfamPF088793.3E-2177119IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0030912Biological Processresponse to deep water
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMSASSRNRS PFTPNQWQEL EQQALVFKYM VTGTPIPSDL IFSIKRSLDT SISSRIFPHH  60
PIGWGCFEMG FGRKVDPEPG RCRRTDGKKW RCSKEAYPDS KYCERHMHRG RNRSRKPVEP  120
VSSSSTTTTT TITSQTQNQN QTNTLLPSYN NRNLSLNNNN TSALTSPSCS FPFSPLSSSS  180
NIGIDSQPFS QSYQNPYFYS QSTSSRPLDS DFQTQQDSTT HHLFLDSGSY SHDEKDYRRH  240
VQGIREGVDE RVFFPETSGS SRSYHDSYQQ LSVNSFKSYS TSQFQNINDN NQRQQEQQQQ  300
HCFVLGTDFK STRPSNKDKE SETTQKPLHH FFGEWTPKNT DSWLDLASNS RIPSDE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1446453e-86AC144645.17 Medicago truncatula chromosome 8 clone mth2-11e15, complete sequence.
GenBankAC1833043e-86AC183304.14 Medicago truncatula chromosome 8 clone mth2-68f12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012574046.10.0growth-regulating factor 5-like isoform X1
TrEMBLA0A1S2YV820.0A0A1S2YV82_CICAR; growth-regulating factor 5-like isoform X1
STRINGXP_004510465.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.17e-63growth-regulating factor 5