PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004510296.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 838aa    MW: 92553 Da    PI: 6.5379
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004510296.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.11.5e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ rq+kvWFqNrR +ek+
  XP_004510296.1 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPRQIKVWFQNRRCREKQ 75
                    5679*****************************************************97 PP
2START177.67.4e-561613692205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++v+ ++  g+++l 
  XP_004510296.1 161 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPLWFRDCRAIDIVNVLPTAngGTIELL 254
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+   ++g++vi+++S+ ++q+ p+    +++vRa +lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_004510296.1 255 YMQLYAPTTLAPaRDFWLLRYTSVVEDGSLVICERSLKNTQNGPSmppVPHFVRADMLPSGYLIRPCEGGGSIIHVVDHMDLEPWSVPEVLRPLY 349
                     *******************************************999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_004510296.1 350 ESSTMLAQKTTMAALRHLRQ 369
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4351276IPR001356Homeobox domain
SMARTSM003891.5E-151480IPR001356Homeobox domain
SuperFamilySSF466893.08E-161678IPR009057Homeodomain-like
CDDcd000866.77E-171777No hitNo description
PfamPF000464.4E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-181975IPR009057Homeodomain-like
CDDcd146862.21E-469108No hitNo description
PROSITE profilePS5084824.848151365IPR002913START domain
CDDcd088758.56E-79155370No hitNo description
SMARTSM002341.1E-41160370IPR002913START domain
SuperFamilySSF559615.22E-38160370No hitNo description
Gene3DG3DSA:3.30.530.203.9E-23160366IPR023393START-like domain
PfamPF018521.5E-53161369IPR002913START domain
PfamPF086702.5E-50695837IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 838 aa     Download sequence    Send to blast
MAMSCKDGNK HLMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPR  60
QIKVWFQNRR CREKQRKESF RLQGVNRKLT AMNKLLMEEN DRLQKQVSHL VYENGYFRQN  120
TQNTAQATKD TSCESVVTSG QHNMSSQHPP RDASPAGLLS IAEETLAEFL SKATGTAVEW  180
VQMPGMKPGP DSIGIVAISH GCTGVAARAC GLVGLEPTRV AEILKDRPLW FRDCRAIDIV  240
NVLPTANGGT IELLYMQLYA PTTLAPARDF WLLRYTSVVE DGSLVICERS LKNTQNGPSM  300
PPVPHFVRAD MLPSGYLIRP CEGGGSIIHV VDHMDLEPWS VPEVLRPLYE SSTMLAQKTT  360
MAALRHLRQI SHEVSQSNVT GWGRRPAALR ALSQRLSRGF NEALNGFTDE GWTMMGNDGV  420
DDVTILVNSS PEKLMGLNLS FGNGFPSVSN AVLCAKASML LQNVPPAILL RFLREHRSEW  480
ADTNMDAYTA AAIKVGPCSL TGSRIGNYGG QVILPLAHTI EHEEFLEVIK LDGVSHSPED  540
AMLPRELFLL QLCSGMDENA IGTCAELIFA PIDASFADDA PLLPSGFRII PLESGKEASS  600
PNRTLDLASA LDIGPTGNRA SSDNAGNSGC VRSVMTIAFE FAFESHMQEN VACMARQYVR  660
SIISSVQRVA LALSPSHLSP HGGLRSPLGT PEAQTLAHWI CNSYRCYLGV ELLKSNNEGK  720
ESILKSLWHH SDAVLCCTLK ALPVFTFSNQ AGLDMLETTL VALQDITLEK IFDDHGRKTL  780
FSEFPQIIQQ GFACLQGGIC LSSMGRPVSY ERVVAWKVLN DEENAHCICF MFMNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004510296.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004510296.10.0homeobox-leucine zipper protein ATHB-15-like isoform X1
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S2YUW60.0A0A1S2YUW6_CICAR; homeobox-leucine zipper protein ATHB-15-like isoform X1
STRINGXP_004510296.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]