PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004508907.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 308aa MW: 34673.7 Da PI: 8.1564 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00093 | 202 | 222 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk+F+++ L +H +++ XP_004508907.1 202 CENCGKTFRSSRALGSHKSVC 222 *****************9985 PP | |||||||
2 | zf-C2H2 | 11.7 | 0.00082 | 239 | 261 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+F + L H r+H XP_004508907.1 239 FECPFCSKVFGSGQALGGHKRSH 261 89**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.40.10 | 6.3E-4 | 2 | 13 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13912 | 6.5E-8 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.054 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.40.10 | 6.3E-4 | 194 | 239 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
Pfam | PF13912 | 0.0037 | 200 | 219 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.48E-8 | 200 | 261 | No hit | No description |
PROSITE profile | PS50157 | 8.559 | 200 | 221 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 75 | 200 | 220 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.1E-11 | 239 | 262 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.028 | 239 | 261 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 239 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 240 | 261 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 241 | 261 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MERHKCKLCS RTFGNGRALG GHMKAHLAIA KPKIPLITQS ATSFSSFSSS ESEQEQQQQE 60 EKALVYVLRE NPKMSYKIAD PKFTESLIVV QDRESETESK NPLTRQRSKR NRKNNINNND 120 FQSKKPKMSG FIFSTPTPPF NEQEPVSSVS NTSPEEDVAM CLMMLSRDKW SRERNNINNV 180 FEEQEQEQEE SKVKRVRGKH LCENCGKTFR SSRALGSHKS VCCRNQDQVK NTNNGDKIFE 240 CPFCSKVFGS GQALGGHKRS HLISSSSNSN ANNVNPSVSF KESFIDLNLP APLEVEDDDD 300 DLSVVSDA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 109 | RQRSKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004508907.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004508907.1 | 0.0 | zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S2YRT8 | 0.0 | A0A1S2YRT8_CICAR; zinc finger protein ZAT9-like | ||||
STRING | XP_004508907.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF767 | 34 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 3e-42 | C2H2-like zinc finger protein |