PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004507988.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRF
Protein Properties Length: 392aa    MW: 44548.4 Da    PI: 7.7149
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004507988.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.71.1e-2477120144
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                     d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++rsrk++e
  XP_004507988.2  77 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVE 120
                     79***************************************987 PP
2QLQ561.2e-19943236
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                    +FT++Q+q+L++Q+l+yKy+a++  +Pp+Ll+ i+
  XP_004507988.2  9 PFTPSQWQELEHQALVYKYMASGISIPPDLLFTIK 43
                    9******************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.0E-11844IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.2E-14942IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.797944IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.9877121IPR014977WRC domain
PfamPF088791.4E-2078120IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMNGRNRYPF TPSQWQELEH QALVYKYMAS GISIPPDLLF TIKRSFLDSP LSSRMLPHQS  60
QHFGWNYLPM GLGRKIDPEP GRCRRTDGKK WRCSKEAYPD SKYCERHMHR GKNRSRKPVE  120
VLKTTTTNNT DAAASTILSI TKNSFLDPVD TTSSLVTPTT HETTSNYHHY NPHQHSSSSS  180
YSSSYHLQHS XLYHNNNPPP STSRPNSSLA FSFQDNNSAP LFLDSSSSHS NNNNNNTDCR  240
NRYVYGLKEE VDEHAFFTEP SGTMRSLSAS SMDDSWQLTP LTISSSSSSK QRSCSGLSNE  300
NEYSYLQLQS LSDNNNNNSK QPHQDQSCYI SGSDGKEEPQ KIFHRFFDEW PPKSRNSWLD  360
LDDKSSTTQL SISIPTSSHD FTTFSSTNQR DG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004507988.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818063e-62LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132563e-62LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507988.20.0growth-regulating factor 1-like isoform X1
TrEMBLA0A1S2YPP30.0A0A1S2YPP3_CICAR; growth-regulating factor 1-like isoform X1
STRINGXP_007154592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40433459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.13e-55growth-regulating factor 5