PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004506622.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | FAR1 | ||||||||
Protein Properties | Length: 543aa MW: 63105.4 Da PI: 9.1089 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.9 | 4.5e-20 | 24 | 110 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+ +Y+ ++GF vrk++ +k+ ++g+i + +fvCskeg r+ +k++ + + ++aetrt+Cka++ + + +g++++++++++HnH+l+ XP_004506622.1 24 QFWLTYSVHAGFGVRKRYANKN-KDGTISSCRFVCSKEGVRKIDKRD-VFVNIHKAETRTDCKARISLVCQ-NGNFVIHEFVEDHNHPLQ 110 69****************9999.7888*****************999.99999***************999.****************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-16 | 24 | 110 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.064 | 321 | 357 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-7 | 332 | 359 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 3.4E-6 | 332 | 355 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 543 aa Download sequence Send to blast |
MSSSNVDWKP RVGMKFDNID VAYQFWLTYS VHAGFGVRKR YANKNKDGTI SSCRFVCSKE 60 GVRKIDKRDV FVNIHKAETR TDCKARISLV CQNGNFVIHE FVEDHNHPLQ LPETTHMLAS 120 HRKITEVQAY EIDLADDSGL RQKSTFQLMS THAGNRANLG FTRLDVKNYL SARRQRSMMY 180 GDVGCLSQYF QRQLLENPSF FHAYQMDIEE QITNVFWCDA NMVLDYGYFG DVVSLDTTYC 240 TNHANRPLTI ESFKWLFDTF LQAHNHKKPK LIQMGKVYTH VVFELFQNEF KLFLALSILE 300 RNESHSLCEY VITMVNHEGF WRVSFDRAST SITCSCRKFE TFGILCSHAL KVFEANDVKV 360 IPEKYILRRW AREARCGIVH DFRGKEVEGD PKLSRTRKFR QVVSKFIRVA AEASPCEEHL 420 KIVDNYVDVM CKKIKECRLQ VIDNEINENP TFVSNNVMQP TGFKIRPNLK RHMHKRPKSF 480 IEKKKAPSRR KKAQDKLGES HMLDKVSCSA PPTYEPPQTQ KDQFSFTTLL MAPLDETNVP 540 TLY |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004506622.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027191115.1 | 0.0 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A3Q7YFU8 | 0.0 | A0A3Q7YFU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
STRING | XP_004506622.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-40 | FAR1-related sequence 5 |