PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004506622.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 543aa    MW: 63105.4 Da    PI: 9.1089
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004506622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR163.94.5e-2024110190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +f+ +Y+ ++GF vrk++ +k+ ++g+i + +fvCskeg r+ +k++ +  + ++aetrt+Cka++ +  + +g++++++++++HnH+l+
  XP_004506622.1  24 QFWLTYSVHAGFGVRKRYANKN-KDGTISSCRFVCSKEGVRKIDKRD-VFVNIHKAETRTDCKARISLVCQ-NGNFVIHEFVEDHNHPLQ 110
                     69****************9999.7888*****************999.99999***************999.****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-1624110IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.064321357IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-7332359IPR006564Zinc finger, PMZ-type
PfamPF044343.4E-6332355IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MSSSNVDWKP RVGMKFDNID VAYQFWLTYS VHAGFGVRKR YANKNKDGTI SSCRFVCSKE  60
GVRKIDKRDV FVNIHKAETR TDCKARISLV CQNGNFVIHE FVEDHNHPLQ LPETTHMLAS  120
HRKITEVQAY EIDLADDSGL RQKSTFQLMS THAGNRANLG FTRLDVKNYL SARRQRSMMY  180
GDVGCLSQYF QRQLLENPSF FHAYQMDIEE QITNVFWCDA NMVLDYGYFG DVVSLDTTYC  240
TNHANRPLTI ESFKWLFDTF LQAHNHKKPK LIQMGKVYTH VVFELFQNEF KLFLALSILE  300
RNESHSLCEY VITMVNHEGF WRVSFDRAST SITCSCRKFE TFGILCSHAL KVFEANDVKV  360
IPEKYILRRW AREARCGIVH DFRGKEVEGD PKLSRTRKFR QVVSKFIRVA AEASPCEEHL  420
KIVDNYVDVM CKKIKECRLQ VIDNEINENP TFVSNNVMQP TGFKIRPNLK RHMHKRPKSF  480
IEKKKAPSRR KKAQDKLGES HMLDKVSCSA PPTYEPPQTQ KDQFSFTTLL MAPLDETNVP  540
TLY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004506622.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191115.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A3Q7YFU80.0A0A3Q7YFU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004506622.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-40FAR1-related sequence 5