PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505981.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YC | ||||||||
Protein Properties | Length: 193aa MW: 21894.6 Da PI: 10.1745 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45 | 2.3e-14 | 89 | 177 | 11 | 99 |
NF-YC 11 ekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 e +++ k h +P+ ri+ ilk + ++s ea + ka e f+ +l+ ++ + +n++++l + ++ +v++ +dfl d vp++ XP_004505981.2 89 EGEEEAKTHVFPMNRIRTILKGEISDLRVSQEAILAINKATEKFLEQLAQEAYACSVQNRKKSLSYNHLSHVVSKQRRYDFLSDFVPEK 177 6678899****************99999**********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-17 | 90 | 175 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.7E-13 | 99 | 161 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-22 | 99 | 176 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MTVVRKVLLS SSSSMASSNN SIAENKKSKN TETSTPTSKI KKERDIEKSK EKKKNSKNKK 60 LKLSNGNSKE HEEDKGKQRE HEVEEGGGEG EEEAKTHVFP MNRIRTILKG EISDLRVSQE 120 AILAINKATE KFLEQLAQEA YACSVQNRKK SLSYNHLSHV VSKQRRYDFL SDFVPEKVKA 180 EDALRETDSR GNR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505981.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ918299 | 1e-107 | JQ918299.1 Medicago truncatula nuclear transcription factor Y subunit C7 (NF-YC7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505981.2 | 1e-137 | nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | A0A1S2YK31 | 1e-136 | A0A1S2YK31_CICAR; nuclear transcription factor Y subunit C-2 | ||||
STRING | XP_004505981.1 | 1e-136 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12016 | 30 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 6e-29 | nuclear factor Y, subunit C10 |