PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004505182.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | G2-like | ||||||||
Protein Properties | Length: 411aa MW: 45797 Da PI: 6.435 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102 | 3.8e-32 | 269 | 324 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a+++LGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ XP_004505182.2 269 KQRRCWSPELHRRFVSALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLH 324 79****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-29 | 266 | 327 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.56 | 266 | 326 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.4E-18 | 266 | 327 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-26 | 269 | 324 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.3E-8 | 271 | 322 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 411 aa Download sequence Send to blast |
MGSLPSELTL DLRPTFLPKT ISDFLLDLSS IQPTSDKLSK LHDFLSRLED ELKKIDAFKR 60 ELPLCMFLLN DAILVLKEEL EKCRVQNSLP VLEEFIPLKK EIDQSEENNN DDDDNNNNEC 120 RDKMNWMSSV QLWNNNNTTT NNNASDQKHN HNKLETKKME EEEQSVTVAE EPIFQPCSSN 180 RNGGSAFMPF STYSSVPVTT VTLAAPKQEK EDTVINRLSL LTPGMKSLRE GFGSRGSRGS 240 SSRAVSSSPP TVHPSLRAGP LQPQQTSRKQ RRCWSPELHR RFVSALQKLG GSQAATPKQI 300 RELMQVDGLT NDEVKSHLQK YRLHTRRGPA SSSNQSVVVL GGLWMSQEQY NESSKGSSSA 360 SGSPQSPLHL ATGSRGGTSP TEDDSLEDDE DAKSENYSWK SHIQRPGKVG V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 4e-14 | 269 | 322 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 4e-14 | 269 | 322 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 4e-14 | 269 | 322 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 4e-14 | 269 | 322 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-14 | 269 | 322 | 2 | 55 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004505182.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004505182.2 | 0.0 | myb family transcription factor EFM isoform X1 | ||||
TrEMBL | A0A1S2YI81 | 0.0 | A0A1S2YI81_CICAR; myb family transcription factor EFM isoform X1 | ||||
STRING | XP_004505182.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1208 | 34 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37180.1 | 2e-45 | G2-like family protein |