PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504410.2
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 431aa    MW: 48342.6 Da    PI: 6.9849
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504410.2genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.91.8e-40170246177
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                     +CqvegC+ dls+ak yhr+h+vCe+hsk+p v+++gle+rfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk++
  XP_004504410.2 170 RCQVEGCSLDLSSAKGYHRKHRVCETHSKSPLVVIAGLERRFCQQCSRFHALFEFDENKRSCRKRLSHHNARRRKPR 246
                     6**************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.8E-33163232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.445168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.72E-38169248IPR004333Transcription factor, SBP-box
PfamPF031105.4E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 431 aa     Download sequence    Send to blast
MEVNAKSPSS LWEWDNLSFF NTKPTENPKL QPPNWSIDLD QEINVGLLDT SGGSGCSGSE  60
LIHASTSRSF SSSSNKDSKK CIFGFESSQD DSSGKMELSK DEPVETCNAL QLSSVSGEPL  120
LTLKLGKRVY FEDVCQETDS KNLTFCVDPM SSLSIAKKCK SNGQNLQCPR CQVEGCSLDL  180
SSAKGYHRKH RVCETHSKSP LVVIAGLERR FCQQCSRFHA LFEFDENKRS CRKRLSHHNA  240
RRRKPRLDDP LQSSQSALSP SHCDGNQQTS PFAYSRTATY LAGQNIHNGK LPQTKDFLLK  300
PVKDNSDIPS TLTMLSDDSN FHFTSRIPAT KRIDPGVEDF ISFSDTNATQ DFSCARSLLS  360
TNPWDLYETK SISLEHSNRT TSTAQAIAHS MNRGMPLSSS EYWHNDRDQQ VNSNMWISNS  420
NCEDRNHFQE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-261712441184squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504410.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504410.20.0squamosa promoter-binding-like protein 2
TrEMBLA0A1S2YGE10.0A0A1S2YGE1_CICAR; squamosa promoter-binding-like protein 2
STRINGXP_004504410.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.36e-60squamosa promoter binding protein-like 2