PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 283aa MW: 32106.8 Da PI: 9.7003 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.7 | 1.1e-06 | 107 | 128 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r n++ H+r+H XP_004504082.1 107 FCEICGKGFTRDANMRMHMRSH 128 6********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.25E-5 | 105 | 129 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 106 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0013 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12874 | 6.3E-5 | 107 | 128 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 5.1E-6 | 108 | 128 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 41 | 154 | 187 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 180 | 192 | 213 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.8E-4 | 206 | 239 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MHNHTETQQI KSNNLIIPLH NLSKLNTQID SLKHFIFQSI NTNTLLSKHH LDTLSNQLSS 60 SIRHVITNAS ALLAASPVTV TVSPTVNEHS ETVELNAVEL LAKHFHFCEI CGKGFTRDAN 120 MRMHMRSHGE RFKTREALRG GCGVREARLT ATRFSCPFEG CKRNKLHKKF MPLKSVLCLR 180 NHFKRSHCPK THTCDRCKRK SFAVISDLKS HVKQCGGEST WKCTCGTTFS RKEKLFGHVA 240 RFEGHSPAVE VGEEEKRKTM EAAPAEGDRL PEGFFDDLEK FWV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504082.1 | 0.0 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q943I6 | 3e-63 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A1S2YFK6 | 0.0 | A0A1S2YFK6_CICAR; zinc finger protein STOP1 homolog | ||||
STRING | XP_004504082.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 1e-64 | C2H2 family protein |
Publications ? help Back to Top | |||
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