PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004504018.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 702aa    MW: 78377.4 Da    PI: 4.5819
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004504018.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.15.6e-10552595146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+W++++ e +++av+q+G++ ++ I + +   +t+ q+k+++ k
   XP_004504018.1 552 RGKWSKQDTEVFYEAVRQFGTD-FSMIQQLFH-DKTRHQIKLKYKK 595
                      89********************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159633.0E-26545630No hitNo description
Gene3DG3DSA:1.10.10.601.7E-6548595IPR009057Homeodomain-like
PROSITE profilePS512939.133550598IPR017884SANT domain
SMARTSM007172.4E-7551599IPR001005SANT/Myb domain
SuperFamilySSF466894.34E-10553601IPR009057Homeodomain-like
CDDcd001671.73E-5554595No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MDLFDDLLSE TSSARVRPGA RFAPKAKSKH QPQKNVSASQ DVNNVNVASS SPTHNNDNEL  60
NNVEVIHNSL QDTLNAGFKN DSGDSNTAAL SESNIHSNFD SGEVGKGLLS EEIELDPFSN  120
VLPDSGTGNA HKFKPKIKPR PRVGKTSANT SASSSVMMEK SGITLSEDSR SLEEVIPSQP  180
DSLNVMPSEA LVDNGTRDWP SNFGKSTAET AEIFSELEVL DDFLNEAATG TGKTDLNSFN  240
MKGAEENFVL PEYDNKSRSE TQAGADLNPD CPIDNVYDYQ TMKSGTDPTF EIPMHDGLAN  300
STDSPTLADS LQQDGIGEKE DTSERKKSPK KHKRSSVAAG MEDKSGKTSR QPRKQSARKP  360
AKNSPLNEAI VDDDDPDPSY DANRDELEEN DEEDGVDYLS KKKKASTRPR KKSVAKNGKT  420
SEKRKKTNDD LENITKEPPK KFSHSSRRKK RCVDKALLDD EELDHRTIPI RDVILLADYR  480
ERLAKKEAIT SKTSSTNESM RGFLNEDDAN NEDENFGSDD GSRDLDDDQA NEKITSTNPL  540
INYQSFMDKA PRGKWSKQDT EVFYEAVRQF GTDFSMIQQL FHDKTRHQIK LKYKKEERQH  600
PLQLYDALNN RATDLSFFQK VIEKQKQTSN KAEQDVRDAS DFMPEDEVED PPPGTKEEVT  660
TTEQDLIDVK DQDGSTAFQN PEQSDDSDDD DLEKWSHYQS AV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409425RKKSVAKNGKTSEKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004504018.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1674043e-45AC167404.11 Medicago truncatula clone mth2-9d11, complete sequence.
GenBankAC2024853e-45AC202485.8 Medicago truncatula clone mth2-176b2, complete sequence.
GenBankAC2035413e-45AC203541.4 Medicago truncatula clone mth2-20k1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004504018.10.0transcription factor TFIIIB component B'' isoform X1
TrEMBLA0A1S2YFF40.0A0A1S2YFF4_CICAR; transcription factor TFIIIB component B'' isoform X1
STRINGXP_004504018.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36662938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.13e-33MYB_related family protein