PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004504018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 702aa MW: 78377.4 Da PI: 4.5819 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.1 | 5.6e-10 | 552 | 595 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+W++++ e +++av+q+G++ ++ I + + +t+ q+k+++ k XP_004504018.1 552 RGKWSKQDTEVFYEAVRQFGTD-FSMIQQLFH-DKTRHQIKLKYKK 595 89********************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 3.0E-26 | 545 | 630 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-6 | 548 | 595 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 9.133 | 550 | 598 | IPR017884 | SANT domain |
SMART | SM00717 | 2.4E-7 | 551 | 599 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.34E-10 | 553 | 601 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.73E-5 | 554 | 595 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 702 aa Download sequence Send to blast |
MDLFDDLLSE TSSARVRPGA RFAPKAKSKH QPQKNVSASQ DVNNVNVASS SPTHNNDNEL 60 NNVEVIHNSL QDTLNAGFKN DSGDSNTAAL SESNIHSNFD SGEVGKGLLS EEIELDPFSN 120 VLPDSGTGNA HKFKPKIKPR PRVGKTSANT SASSSVMMEK SGITLSEDSR SLEEVIPSQP 180 DSLNVMPSEA LVDNGTRDWP SNFGKSTAET AEIFSELEVL DDFLNEAATG TGKTDLNSFN 240 MKGAEENFVL PEYDNKSRSE TQAGADLNPD CPIDNVYDYQ TMKSGTDPTF EIPMHDGLAN 300 STDSPTLADS LQQDGIGEKE DTSERKKSPK KHKRSSVAAG MEDKSGKTSR QPRKQSARKP 360 AKNSPLNEAI VDDDDPDPSY DANRDELEEN DEEDGVDYLS KKKKASTRPR KKSVAKNGKT 420 SEKRKKTNDD LENITKEPPK KFSHSSRRKK RCVDKALLDD EELDHRTIPI RDVILLADYR 480 ERLAKKEAIT SKTSSTNESM RGFLNEDDAN NEDENFGSDD GSRDLDDDQA NEKITSTNPL 540 INYQSFMDKA PRGKWSKQDT EVFYEAVRQF GTDFSMIQQL FHDKTRHQIK LKYKKEERQH 600 PLQLYDALNN RATDLSFFQK VIEKQKQTSN KAEQDVRDAS DFMPEDEVED PPPGTKEEVT 660 TTEQDLIDVK DQDGSTAFQN PEQSDDSDDD DLEKWSHYQS AV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 425 | RKKSVAKNGKTSEKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004504018.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC167404 | 3e-45 | AC167404.11 Medicago truncatula clone mth2-9d11, complete sequence. | |||
GenBank | AC202485 | 3e-45 | AC202485.8 Medicago truncatula clone mth2-176b2, complete sequence. | |||
GenBank | AC203541 | 3e-45 | AC203541.4 Medicago truncatula clone mth2-20k1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004504018.1 | 0.0 | transcription factor TFIIIB component B'' isoform X1 | ||||
TrEMBL | A0A1S2YFF4 | 0.0 | A0A1S2YFF4_CICAR; transcription factor TFIIIB component B'' isoform X1 | ||||
STRING | XP_004504018.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3666 | 29 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 3e-33 | MYB_related family protein |