PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004503093.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family NAC
Protein Properties Length: 636aa    MW: 73300.9 Da    PI: 6.4171
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004503093.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.21.1e-5561331128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeelv++yLk+k++g+++el e+i+evd+yk+ePwdLp k  + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v 
  XP_004503093.1   6 LPPGFRFHPTDEELVSYYLKRKINGRRIEL-EIIPEVDLYKCEPWDLPgKsLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVQ 99 
                     79****************************.99***************6434445667************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s +++ vg+kktLv+y+grap+g++t Wvmheyrl
  XP_004503093.1 100 S-ETRSVGMKKTLVYYRGRAPHGTRTGWVMHEYRL 133
                     9.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-644157IPR003441NAC domain
PROSITE profilePS5100561.3136157IPR003441NAC domain
PfamPF023651.6E-307133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 636 aa     Download sequence    Send to blast
MAPVSLPPGF RFHPTDEELV SYYLKRKING RRIELEIIPE VDLYKCEPWD LPGKSLLPGK  60
DLEWYFFSPR DRKYPNGSRT NRATKCGYWK ATGKDRKVQS ETRSVGMKKT LVYYRGRAPH  120
GTRTGWVMHE YRLDERECQN PSSGLQDAYA LCRVFKKSTV IVPKLAHNLS ITTDHSQGRG  180
DVLDTSNYNF MPCHSTSTQN LHGLLTRDNN STWTQFLSDD LLNLPMSSSF PNYASTPYPP  240
SKVDIALECA RMQHRFSMPP LEVEDFPQVS ISELNSMCSG NRNETDILQE ILSVAQASQD  300
LIHQSNYSHP FGGNQNDFTF MVGNNYNHVN DHMSSMRYDD KAWEDPNTRS IEIGDLDDEF  360
KAERMVENLR WVGMSSNDLE KSFMEEHQKV VPIEDISSFQ TNRKENEVQV ESEQQNINKE  420
LNDNDIENFS MGFINDDDPN ENFINEGNID YSNSTSYEVV EETKISHGMF VATRQVADTF  480
FHKITPSQTI KVQLNPIMEN KQSIENKEIT LIIPKNQGNS LLRKFKANFI GYMKKPTKTM  540
VNAIVFIFAL FLVLCVYLKE QVEDWKPKPE YVKRKNCYEA SNSMKRVINW NEQEKIWFIG  600
IKSGKGFDVV LKKIGIFLTI SLAICTMWVN HIIASP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-56115915170NAC domain-containing protein 19
3swm_B2e-56115915170NAC domain-containing protein 19
3swm_C2e-56115915170NAC domain-containing protein 19
3swm_D2e-56115915170NAC domain-containing protein 19
3swp_A2e-56115915170NAC domain-containing protein 19
3swp_B2e-56115915170NAC domain-containing protein 19
3swp_C2e-56115915170NAC domain-containing protein 19
3swp_D2e-56115915170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004503093.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1518220.0AC151822.29 Medicago truncatula clone mth2-32h21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004503093.10.0NAC domain-containing protein 86
TrEMBLA0A1S2YD530.0A0A1S2YD53_CICAR; NAC domain-containing protein 86
STRINGXP_004503093.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF44213460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.11e-158NAC domain containing protein 28