PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004503052.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | GRF | ||||||||
Protein Properties | Length: 577aa MW: 63185.7 Da PI: 7.015 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 75.7 | 4.7e-24 | 183 | 225 | 2 | 44 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e XP_004503052.1 183 LEPGRCRRTDGKKWRCSRDVAPNHKYCERHMHRGRPRSRKPVE 225 69**************************************987 PP | |||||||
2 | QLQ | 50.7 | 5.4e-18 | 125 | 156 | 2 | 33 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT aQ+++L++Q+++yKyL+a++P+P++Ll XP_004503052.1 125 PFTIAQWNELERQAMIYKYLMASLPIPSDLLS 156 9*****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.1E-7 | 124 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.2E-12 | 125 | 155 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 20.212 | 125 | 160 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.673 | 182 | 226 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.0E-20 | 184 | 225 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010114 | Biological Process | response to red light | ||||
GO:0010218 | Biological Process | response to far red light | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MSEFRVQDKE PSSSTKKPTT TNNNIVVGSV FKVESFEGSP NKMMMMQHHN DNHHHHHRSS 60 FHNDDSSVAG PTMPFSDGYS SLSAATIDGV SLNLQPFHSI SSYNNITSAT TTTLETPGEM 120 GAVYPFTIAQ WNELERQAMI YKYLMASLPI PSDLLSFMPT SSHSSSNGGG FNMKSSSSSN 180 TDLEPGRCRR TDGKKWRCSR DVAPNHKYCE RHMHRGRPRS RKPVELHTNY DNNNNNNSHQ 240 IKKARHDSNP FHLPDVTLAI PNSTTRKYGS SSHSLASNTF HPYLQSSLSL DNNSFGVKTS 300 SFVSSSKRPR GLGWMLNGDT ISLAVCDSGW QPLMHNKIGM TTESSYHNNN TESHYLNSFP 360 LYNNNNNTSE LTQQQKPLPL FLNPLVVPTQ TLQSEKPRGF TLFDAWPNTE TLETNTNNNN 420 ASSSIGKLSL TSLDISMGGC VMSEENQEMS TIDMGLGLME EPNENTSNDD DGNKIALSNW 480 LNQETWVGSN SILGGPLAEV LRPSTVTTMS DPTTNSNPSS PATKLVESSG TLGTANAMVS 540 SSPSGVLQNK TLASFSDSSG NSSPTVASSR TKLSKFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004503052.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004503052.1 | 0.0 | growth-regulating factor 1 | ||||
TrEMBL | A0A1S2YD26 | 0.0 | A0A1S2YD26_CICAR; growth-regulating factor 1 | ||||
STRING | XP_004503052.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7324 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53660.1 | 2e-36 | growth-regulating factor 7 |