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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004502479.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 291aa MW: 33406.8 Da PI: 7.9769 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.4 | 2.9e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv++yL++k++++++++ +i+e+d+yk++PwdLp +++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ + XP_004502479.1 7 LPPGFRFHPTDEELVMHYLCRKCTSQPISV-PIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGH- 99 79****************************.88***************8777899*************************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 + vg+kk Lvfy g+apkg kt+W+mheyrl XP_004502479.1 100 -PKPVGIKKALVFYAGKAPKGDKTNWIMHEYRL 131 .789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-63 | 4 | 157 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.097 | 7 | 157 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MASELQLPPG FRFHPTDEEL VMHYLCRKCT SQPISVPIIA EIDLYKYDPW DLPGMASYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKPIGHP KPVGIKKALV FYAGKAPKGD 120 KTNWIMHEYR LADVDRSIRR KNSLRLDDWV LCRIYNKKGT IEKQPNSGVI NRKTDPSEIE 180 DKKPEILTRG SGLPPHPPPQ ATAGMRDYMY FDTSDSIPKL HTDSSCSEHV VSPEFASEVQ 240 SEPKWNEWEK HLEFPYNYVD TTLNSGFGSQ FQSNNQMSPL QDMFMYLPKT F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-80 | 3 | 163 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004502479.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ477886 | 0.0 | FJ477886.1 Cicer arietinum NAC family transcription factor 5 (NAC5) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001352199.1 | 0.0 | NAC family transcription factor 5 | ||||
Swissprot | Q39013 | 1e-146 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | C7AFG2 | 0.0 | C7AFG2_CICAR; NAC family transcription factor 5 | ||||
STRING | XP_004502479.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-149 | NAC family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 101510065 |