PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004502285.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family SBP
Protein Properties Length: 443aa    MW: 48793.6 Da    PI: 8.3989
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004502285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.53.5e-42171247278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     CqvegC  dls+ak+yhr+h+vC++hsk+p+v+++gle+rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  XP_004502285.1 171 CQVEGCGIDLSSAKDYHRKHRVCDTHSKSPKVVIAGLERRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQP 247
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114132.778168245IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.109.5E-34168232IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-39169250IPR004333Transcription factor, SBP-box
PfamPF031103.7E-32171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEWNAKSPGQ WDWEHLFFLN SKATENPRLQ STDWSAEADR EINAGVLFPS GGSGYSLHAS  60
SSRSSKSASN NSSSNGDSNS KTSMLTQEGS QDDSTGKKEL SKGEPIETSP AAEPSAVVSG  120
DTLLTLKLGK RFYFEDVSAG SHSKKSDFSA VDLSSAKKGK SSSRNLIHPS CQVEGCGIDL  180
SSAKDYHRKH RVCDTHSKSP KVVIAGLERR FCQQCSRFHS LSEFDEKKRS CRRRLSDHNA  240
RRRKPQPEAM RLNPSALSSS SYDGRQIMGQ FAFSRNATNL AWQDIHSSKF PQTKDFILKT  300
PKSFNKIVTM LSDDSSDLLA SKGIGTKATL PGIEDSSNLS DPNATQDVNR ALSLLSTNSW  360
GAAYQTKSLS LEHSNRTSST PSITHAIAPR FPFSSSEYWH TDQQQANSST CISFSGYDSN  420
NRFQDFEHFN TPFDSGFPCN QLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-281712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226243KKRSCRRRLSDHNARRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004502285.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502285.10.0squamosa promoter-binding-like protein 2
RefseqXP_012571808.10.0squamosa promoter-binding-like protein 2
TrEMBLA0A1S3E8S90.0A0A1S3E8S9_CICAR; squamosa promoter-binding-like protein 2
STRINGXP_004502286.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.37e-57squamosa promoter binding protein-like 2