PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004501704.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YC | ||||||||
Protein Properties | Length: 213aa MW: 23844.8 Da PI: 4.832 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 179.1 | 4.2e-56 | 35 | 139 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl XP_004501704.1 35 QLQMFWSYQrqdIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 129 89*****998899********************************************************************************** PP NF-YC 93 vdivprdelk 102 vdivprde+k XP_004501704.1 130 VDIVPRDEIK 139 *******975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 8.87E-34 | 8 | 129 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.3E-20 | 57 | 120 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 5.7E-37 | 58 | 135 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MENNNNNQQQ YPTPQPSAVT PAAPFQHLLQ QQQQQLQMFW SYQRQDIEHV NDFKNHQLPL 60 ARIKKIMKAD EDVRMISAEA PILFAKACEL FILELTIRSW LHAEENKRRT LQKNDIAAAI 120 TRTDIFDFLV DIVPRDEIKD ESTIVGATAS GVPYYYPPMG QPAGMMIGRP AVDPATGVYV 180 QPPSQAWQSV WQTGADDSSY TAAGSSGQPN ADG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-53 | 43 | 135 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 113 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004501704.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT010521 | 0.0 | CT010521.4 M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3, complete sequence. | |||
GenBank | JQ918295 | 0.0 | JQ918295.1 Medicago truncatula nuclear transcription factor Y subunit C3 (NF-YC3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501704.1 | 1e-159 | nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_004501705.1 | 1e-159 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9SMP0 | 1e-102 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1S2Y9Z1 | 1e-157 | A0A1S2Y9Z1_CICAR; nuclear transcription factor Y subunit C-1-like | ||||
STRING | XP_004501704.1 | 1e-158 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11071 | 30 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 1e-103 | nuclear factor Y, subunit C1 |
Publications ? help Back to Top | |||
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