PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004499514.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 366aa MW: 41862.1 Da PI: 8.7259 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65.6 | 5.2e-21 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e ++n+qvtfskRr g++KK +EL++LC++++a+i+fs+ +kl+ + XP_004499514.1 20 KLEKDTNKQVTFSKRRSGLFKKTSELCILCNVDAAIIVFSPADKLFCF 67 56899***************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-30 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.866 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.37E-26 | 12 | 83 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-21 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.0E-19 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MNIFKQKKKT TGRKKIEIKK LEKDTNKQVT FSKRRSGLFK KTSELCILCN VDAAIIVFSP 60 ADKLFCFGQP NTDTIINSYI KGTTEFEASK SIEKSIFYEE HNTEYEEAIH KLEFEKKKLE 120 EFENLSKVWK SGDWWNDPID EMSIDQLEQF MASIYELRRK LVDRVDDLVM MLPRLYFYFV 180 CTSHTTVNTL FYELGKLQSV LRIRDNTLEH VAAFRVSEIY VLDANLNSGF KLQRHVESTV 240 YQSHAKVTGQ HGAWKASGCS NSIAFRHITQ MLYFKVLHFQ KARENKTRKR LIATSDGTPS 300 EASTPFGCVH LELQVVSSLT PLQFLLIIPQ VDMPLLDVLV NVAERSAVSA SKGSSATLYA 360 PAVDPT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3mu6_A | 1e-13 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-13 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-13 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-13 | 12 | 79 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6bz1_A | 1e-13 | 12 | 79 | 2 | 69 | MEF2 CHIMERA |
6bz1_B | 1e-13 | 12 | 79 | 2 | 69 | MEF2 CHIMERA |
6bz1_C | 1e-13 | 12 | 79 | 2 | 69 | MEF2 CHIMERA |
6bz1_D | 1e-13 | 12 | 79 | 2 | 69 | MEF2 CHIMERA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004499514.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | XP_004499514.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-26 | AGAMOUS-like 62 |