PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004498703.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 344aa    MW: 39796.2 Da    PI: 9.6264
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004498703.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR132.42.9e-104784138
            FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38
                    +fYneY+k++GF +r+++ +ksk++g  t+r+f+Csk 
  XP_004498703.1 47 EFYNEYSKRIGFGIRREYANKSKKDGILTSRRFTCSKR 84
                    6***********************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-74784IPR004330FAR1 DNA binding domain
PfamPF105512.5E-17189258IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MNPSSNPPVD CVDNWVNNIH DKIVPESNGN SQPHMEMKFG SEATTYEFYN EYSKRIGFGI  60
RREYANKSKK DGILTSRRFT CSKRIEKYKV VDFVAEHNHP LQPPEYVHMI RSHRHISEVQ  120
ASQIVLADES ELRPKDFHEY MSKQVGGIET IGFTKQDFKN YLRTKRKQSL KYGDVDAQMI  180
NDYGYFGDVI TFDTTYKTNK DYRPLGVFVG LNNHRQTIIF GAALLYDETI PSFQWLFETF  240
LKAMGGEKPK TILTQYDSIA VEQRCGGAMQ WSSGAVVLYL RGEGRRRKEN GFYVSDMFLS  300
TKSKFCEGKG RHKCLKGRYT LWLQRPPQKR EPLHFVAAKA ATKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004498703.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1573761e-79AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004498703.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A1S2Y3C30.0A0A1S2Y3C3_CICAR; protein FAR1-RELATED SEQUENCE 7-like
STRINGXP_004498703.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-43FAR1-related sequence 5