PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004498703.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | FAR1 | ||||||||
Protein Properties | Length: 344aa MW: 39796.2 Da PI: 9.6264 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.4 | 2.9e-10 | 47 | 84 | 1 | 38 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCske 38 +fYneY+k++GF +r+++ +ksk++g t+r+f+Csk XP_004498703.1 47 EFYNEYSKRIGFGIRREYANKSKKDGILTSRRFTCSKR 84 6***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.2E-7 | 47 | 84 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.5E-17 | 189 | 258 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MNPSSNPPVD CVDNWVNNIH DKIVPESNGN SQPHMEMKFG SEATTYEFYN EYSKRIGFGI 60 RREYANKSKK DGILTSRRFT CSKRIEKYKV VDFVAEHNHP LQPPEYVHMI RSHRHISEVQ 120 ASQIVLADES ELRPKDFHEY MSKQVGGIET IGFTKQDFKN YLRTKRKQSL KYGDVDAQMI 180 NDYGYFGDVI TFDTTYKTNK DYRPLGVFVG LNNHRQTIIF GAALLYDETI PSFQWLFETF 240 LKAMGGEKPK TILTQYDSIA VEQRCGGAMQ WSSGAVVLYL RGEGRRRKEN GFYVSDMFLS 300 TKSKFCEGKG RHKCLKGRYT LWLQRPPQKR EPLHFVAAKA ATKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004498703.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC157376 | 1e-79 | AC157376.2 Medicago truncatula chromosome 7 BAC clone mth2-70d8, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004498703.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | A0A1S2Y3C3 | 0.0 | A0A1S2Y3C3_CICAR; protein FAR1-RELATED SEQUENCE 7-like | ||||
STRING | XP_004498703.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3045 | 14 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 6e-43 | FAR1-related sequence 5 |