PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004497520.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 464aa    MW: 52357.2 Da    PI: 7.4793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004497520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.4e-08339385448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 
                      WT  E  +lvd++ ++G g+W+ I r +     Rt+ +++++w+++l
   XP_004497520.1 339 WTIAEVTKLVDGISEYGVGRWTDIQRFLFssSYRTPTDIRDKWRNLL 385
                      9******************************99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-12330388IPR009057Homeodomain-like
PROSITE profilePS5129414.158331389IPR017930Myb domain
SMARTSM007179.1E-8335387IPR001005SANT/Myb domain
SuperFamilySSF466895.1E-14337391IPR009057Homeodomain-like
CDDcd116603.17E-18337386No hitNo description
PfamPF139215.2E-8339398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDREEYLRKC SNMKCQRVQV DESYAPSLQD DEMEVEHLHA EPRNEHGSMD GNLASHIALN  60
DKDDLELEVL DGFLDDVEIG DLEGTVGFSD ACGGFFLDFD FATDVEVLGS GAYEDSLLEN  120
SNSESHSPGF SGSSTAGGIS DSTNVPNNSQ SKCKNDSLDE TVTYDTHGVR SNPSQPSNID  180
CMYNISLDIQ HLHELNNDHS LAGGILSCKK ENITGELFRP APSREKRFRK PTQRYIEESS  240
NARSKEKVPT TGAKCKRRSL SSCNELHVRV KGLKKIPCEK SSNGNSDVTL SELQRRKKNP  300
KKEKLEYGNE PSSLEEFEDE NLAPKRCRTK DRRKQQRMWT IAEVTKLVDG ISEYGVGRWT  360
DIQRFLFSSS YRTPTDIRDK WRNLLRASSA QKFNKKEGEQ NDKNGPRLLP FSVASRVLEL  420
AKVHPYPRRS KKSRDRQVGS SVIESKDSSA VSFGRRNVRR KKCT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004497520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004497520.10.0uncharacterized protein LOC101508866
RefseqXP_004497521.10.0uncharacterized protein LOC101508866
TrEMBLA0A1S2Y0T20.0A0A1S2Y0T2_CICAR; uncharacterized protein LOC101508866
STRINGXP_004497520.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.24e-22TRF-like 6