PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496857.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20645.9 Da PI: 8.0346 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.3 | 7.2e-22 | 20 | 67 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 + e +sn+qvtfskRr g++KK +EL++LC+++va+i+fs+ +kl+ + XP_004496857.1 20 KLEKDSNKQVTFSKRRSGLFKKVSELCILCNVNVAIIVFSPADKLFCF 67 57899***************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.147 | 11 | 71 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.7E-30 | 11 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-27 | 12 | 91 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-20 | 13 | 33 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-22 | 21 | 67 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-20 | 33 | 48 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.2E-20 | 48 | 69 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MNMFHQKKKT TGRKKIEIKK LEKDSNKQVT FSKRRSGLFK KVSELCILCN VNVAIIVFSP 60 ADKLFCFGQP NTDTILKSYL EGTTEFEHSK LTENSSTYEE YNREYEEALK GLEIEKKKMV 120 EVENLAKVWN KGDWWNEPID DMSREELEQF MVSIYELRRK LLERLDGLVM MLAML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 7e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6byy_B | 7e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6byy_C | 7e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6byy_D | 7e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6bz1_A | 8e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6bz1_B | 8e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6bz1_C | 8e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
6bz1_D | 8e-16 | 12 | 81 | 2 | 71 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496857.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496857.1 | 1e-126 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A1S2Y0I1 | 1e-125 | A0A1S2Y0I1_CICAR; agamous-like MADS-box protein AGL62 | ||||
STRING | XP_004496857.1 | 1e-126 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-37 | AGAMOUS-like 62 |