PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004496593.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 790aa MW: 86829.7 Da PI: 5.8901 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 4.9e-21 | 95 | 150 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe++F+++++p++++r +L+k+lgL+ +qVk+WFqNrR+++k XP_004496593.1 95 KKRYHRHTPNQIQELESFFKECPHPDEKQRLDLSKRLGLENKQVKFWFQNRRTQMK 150 688999***********************************************999 PP | |||||||
2 | START | 171.3 | 6.1e-54 | 301 | 524 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG...CT-TT-SEEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke...qWdetlakaetlev 84 la++a++el+k+a+ ++p W ks +++n +e+ + f++ + + ea r+sg+v+ ++ l+e+l+d ++ ++ ++a+a l+v XP_004496593.1 301 LALAAMEELLKMAQTDSPIWIKSLdgerDILNHEEYARLFSSCVGskpngFVAEATRESGIVIINSLALMETLMDANRyadMFQSMIARAINLDV 395 6899************************************66444899999**************************88888888888******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 +s g ga++lm aelq+lsplvp R + f+R+++q+ +g+w++vdvS++ + + ++++ +++lpSg+++++++ng+skvtw+eh+++ XP_004496593.1 396 LSGGiggtrnGAIHLMHAELQLLSPLVPvRHVRFLRFCKQHAEGVWAVVDVSIEIGHDAANGQPFISCRRLPSGCIVQDMPNGYSKVTWIEHWEY 490 ******************************************************99999999********************************* PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 +++++h+l+r+lv sg +ga +w atlqrqce+ XP_004496593.1 491 DESVVHQLYRPLVISGFGFGAHRWIATLQRQCEC 524 ********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.26E-20 | 81 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 82 | 152 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.767 | 92 | 152 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-19 | 93 | 156 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.21E-19 | 94 | 152 | No hit | No description |
Pfam | PF00046 | 1.7E-18 | 95 | 150 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 127 | 150 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.624 | 291 | 527 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.09E-29 | 294 | 524 | No hit | No description |
CDD | cd08875 | 8.07E-114 | 295 | 523 | No hit | No description |
SMART | SM00234 | 4.7E-36 | 300 | 524 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-45 | 301 | 524 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.96E-22 | 552 | 784 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 790 aa Download sequence Send to blast |
MGFESVNSFC RVASVVTDNI YPPIFSSLQN SSSFFSTQRK MEGQSEIGLT GESLDTNNMI 60 GRMREDEYES RSGSDNFEGI SGDDQDAGDE QPKRKKRYHR HTPNQIQELE SFFKECPHPD 120 EKQRLDLSKR LGLENKQVKF WFQNRRTQMK TQLERHENIM LRQENEKLRG ENTMMKEAMS 180 NPVCNNCGGP AIPGQILFEE HQIRIENARL KDELNRICAL TNKFLGKPIS SLASPMALQT 240 SNSGLELGIG RNGMGGSSSL GASLPMGLDL GDSAMPGMRS PMGLMGNSNE IQLERSVLID 300 LALAAMEELL KMAQTDSPIW IKSLDGERDI LNHEEYARLF SSCVGSKPNG FVAEATRESG 360 IVIINSLALM ETLMDANRYA DMFQSMIARA INLDVLSGGI GGTRNGAIHL MHAELQLLSP 420 LVPVRHVRFL RFCKQHAEGV WAVVDVSIEI GHDAANGQPF ISCRRLPSGC IVQDMPNGYS 480 KVTWIEHWEY DESVVHQLYR PLVISGFGFG AHRWIATLQR QCECLAILMS SSISTDDHTA 540 LSQAGRRSML KLAQRMTSNF CSGVCASSAR KWDTLQMGTL SDDMRVMTRK NVDDPGEPPG 600 IVLSAATSVW MPVSRQRLFD FLRDERLRSE WDILSNGGPM QEMVHIAKGQ GQGNCVSLLR 660 ANAVNANDSS MLILQETWMD TSCSVVVYAP VDAQSLNVVM SGGDSAYVAL LPSGFAILPD 720 GNSSDYGASN GTLQKGGSIG SDGGGSLLTV GFQILVNSLP TAKLTMESVD TVNNLISCTI 780 QKIKAALRVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004496593.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC149494 | 0.0 | AC149494.4 Medicago truncatula clone mth2-116m7, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004496593.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A1S2XYQ4 | 0.0 | A0A1S2XYQ4_CICAR; homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
STRING | XP_004496593.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1192 | 34 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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