PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004495872.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

SBP

Protein Properties

Length: 1014aa MW: 113193 Da PI: 6.5084

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004495872.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.9	1.9e-40	157	234	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C adls+ak+yhrrhkvCe+hska+ +lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ XP_004495872.1 157 VCQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHILQEFDEGKRSCRRRLAGHNKRRRKTNN 234 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.2E-33	151	219	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.069	155	232	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	8.76E-38	156	236	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.1E-29	158	231	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:1.25.40.20	1.6E-8	755	901	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-9	756	899	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	9.29E-8	788	899	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1014 aa Download sequence Send to blast
MEARLGDEAY HFYGVGGSSD LSGMRRRSGE WNLNDWRWDG DLFIANRVNP VSADVLGVGQ 60 QFFPLGSGIH PVAGVSSNAS SSCSEEGDLE NPKRSNEGER KRRVIVLEDD GLNEEAGGLS 120 LKLAGHASPV VEREIANWDG MNGKKSRVAG GASNRAVCQV EDCGADLSRA KDYHRRHKVC 180 EMHSKASRAL VGNAMQRFCQ QCSRFHILQE FDEGKRSCRR RLAGHNKRRR KTNNEAVPNG 240 NSINDDQTSS YLLISLLKIL SNMHSDRSDQ NTDQDLLTHL VRSLASQNDE QGSKNLSNLL 300 REQDNLLREG GSSRKSEMVS ALFSNSSQGS PTVIRQHQTV STNEMQHEMM HTHDIMASDH 360 HILSSIKPSI SNSPPAYSEA RDSSAQIKTN NFDLNDIYID SDDGTEDLER LPVSTNLGTS 420 SADYPWIRLD SHQSSPPQTS GNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNDFPLV 480 LRAQILDWLS HSPTDIESYI RPGCIVLTIY LRQTEAVWEE LCCDLSSSLS KLLDVSDDVF 540 WRTGWVHIRV QHQMAFIFNG KVVIDTSLPF RSNNYSKIWT VSPIAVPASK RAQFSVKGVN 600 LMRPATRLMC AFEGKYLVCE DARESTDQYS KDLDELQCIQ FSCSVPVANG RGFIEIEDQG 660 LSSSFFPFIV AEEDVCSEIR VLEPLLELSE TDRNIEGTGK IKAHSQAMDF IHEMGWLLHR 720 SQLKYRMVHL NTGVDLFPLE RFTWLMEFSM DHDWCAVVKK LLNLLLDETV NKGDHPNLHQ 780 ALSDMGLLHR AVRRNSKQLV ELLLRYVPES TSDKLKPTGK ALVDGENHCF LFRPDAVGPA 840 GLTPLHIAAG KDGSEDVLDA LINDPCMVGI EAWKNARDST GSTPEDYARL RGHYTYIHLV 900 QKNLNKRQGA AHVVVEIPRN PAESYTNPKQ NESFTSFEIG KAEVRRGQGH CKLCDSKISC 960 RTAVGRSMVY RPAMLSMVAI AAVCVCVALL FKSSPEVLYM FRPFRWESLD FGTS

Sequence ? help Back to Top

Protein Sequence Length: 1014 aa Download sequence Send to blast

MEARLGDEAY HFYGVGGSSD LSGMRRRSGE WNLNDWRWDG DLFIANRVNP VSADVLGVGQ  60
QFFPLGSGIH PVAGVSSNAS SSCSEEGDLE NPKRSNEGER KRRVIVLEDD GLNEEAGGLS  120
LKLAGHASPV VEREIANWDG MNGKKSRVAG GASNRAVCQV EDCGADLSRA KDYHRRHKVC  180
EMHSKASRAL VGNAMQRFCQ QCSRFHILQE FDEGKRSCRR RLAGHNKRRR KTNNEAVPNG  240
NSINDDQTSS YLLISLLKIL SNMHSDRSDQ NTDQDLLTHL VRSLASQNDE QGSKNLSNLL  300
REQDNLLREG GSSRKSEMVS ALFSNSSQGS PTVIRQHQTV STNEMQHEMM HTHDIMASDH  360
HILSSIKPSI SNSPPAYSEA RDSSAQIKTN NFDLNDIYID SDDGTEDLER LPVSTNLGTS  420
SADYPWIRLD SHQSSPPQTS GNSDSASAQS PSSSSGEAQS RTDRIVFKLF GKEPNDFPLV  480
LRAQILDWLS HSPTDIESYI RPGCIVLTIY LRQTEAVWEE LCCDLSSSLS KLLDVSDDVF  540
WRTGWVHIRV QHQMAFIFNG KVVIDTSLPF RSNNYSKIWT VSPIAVPASK RAQFSVKGVN  600
LMRPATRLMC AFEGKYLVCE DARESTDQYS KDLDELQCIQ FSCSVPVANG RGFIEIEDQG  660
LSSSFFPFIV AEEDVCSEIR VLEPLLELSE TDRNIEGTGK IKAHSQAMDF IHEMGWLLHR  720
SQLKYRMVHL NTGVDLFPLE RFTWLMEFSM DHDWCAVVKK LLNLLLDETV NKGDHPNLHQ  780
ALSDMGLLHR AVRRNSKQLV ELLLRYVPES TSDKLKPTGK ALVDGENHCF LFRPDAVGPA  840
GLTPLHIAAG KDGSEDVLDA LINDPCMVGI EAWKNARDST GSTPEDYARL RGHYTYIHLV  900
QKNLNKRQGA AHVVVEIPRN PAESYTNPKQ NESFTSFEIG KAEVRRGQGH CKLCDSKISC  960
RTAVGRSMVY RPAMLSMVAI AAVCVCVALL FKSSPEVLYM FRPFRWESLD FGTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-30	149	231	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004495872.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004495873.1	0.0	squamosa promoter-binding-like protein 1
Refseq	XP_004495874.1	0.0	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A1S2XYY6	0.0	A0A1S2XYY6_CICAR; squamosa promoter-binding-like protein 1
STRING	XP_004495872.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]