PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495792.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | Trihelix | ||||||||
Protein Properties | Length: 549aa MW: 64187.3 Da PI: 6.3653 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 50.4 | 5.8e-16 | 105 | 176 | 2 | 78 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessst 78 Wt++e+l+L+++r++me+++ + We+vs+k++e g++rs+ +Ckek+e+ ++ + +i+ +++++++++ ++ XP_004495792.1 105 WTNDEILTLLKIRSNMESWFPDF-----TWEHVSRKLAEVGYKRSADKCKEKFEEESRFFNNININNNNNNNNNNNN 176 ********************998.....9**********************************99999986666554 PP | |||||||
2 | trihelix | 94.1 | 1.4e-29 | 412 | 498 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk..lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+evlaLi++r + +++ +++k k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ ++kr s +s+tcpyf+ l XP_004495792.1 412 RWPKDEVLALINLRCNNNNNNNEEKegNKAPLWERISQGMLELGYKRSAKRCKEKWENINKYFRKTKDANRKR-SLDSRTCPYFHLLS 498 8**************99999998654499*******************************************8.9999*******875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.6E-11 | 103 | 171 | No hit | No description |
PROSITE profile | PS50090 | 6.272 | 104 | 156 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 3.2E-19 | 411 | 498 | No hit | No description |
CDD | cd12203 | 1.36E-20 | 411 | 478 | No hit | No description |
PROSITE profile | PS50090 | 6.829 | 412 | 471 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001158 | Molecular Function | enhancer sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 549 aa Download sequence Send to blast |
MFDGVPDQFH QFITPRTSSL PLHLPFPLSS TPNNTTFPTF DPYNQQNHPS HHHQIPLQVQ 60 PNLLHPLHHQ KDEDKQENTS VTTPSMNFQI ERDHRQILPQ LVDPWTNDEI LTLLKIRSNM 120 ESWFPDFTWE HVSRKLAEVG YKRSADKCKE KFEEESRFFN NININNNNNN NNNNNNNNYG 180 KSYRFVTELE ELYNNNNNNN NNQVVESEKP SEGKDKMDHD EDSRNDDLLV TKKKEESVTN 240 EERKRKRGEN RFEVFKGFCE SVVKKMIEQQ EEMHNKLIED MLKRDEEKFE REEAWKKQEM 300 EKMNKELELM AREQAIAGDR QANIIEFLNK FSTTKVTTLL NSSIILHSQN PNIPSSIDKT 360 IQPTPSFENP SSNLPSKKNP NISSLDSVPL VKNSRSSYSN LIINEKEDIG RRWPKDEVLA 420 LINLRCNNNN NNNEEKEGNK APLWERISQG MLELGYKRSA KRCKEKWENI NKYFRKTKDA 480 NRKRSLDSRT CPYFHLLSNL YNQGKLVLQS DQNQESNLNV QENIQDQIEV APADENKGGE 540 SSQVGPACW |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 246 | KKKEESVTNEERKRKR |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00011 | PBM | Transfer from AT5G28300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495792.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495792.1 | 0.0 | trihelix transcription factor GTL2-like | ||||
TrEMBL | A0A1S2XWX4 | 0.0 | A0A1S2XWX4_CICAR; trihelix transcription factor GTL2-like | ||||
STRING | XP_004495792.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5043 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28300.1 | 9e-67 | Trihelix family protein |