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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004495721.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 530aa MW: 57161.6 Da PI: 8.9454 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 90 | 112 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H XP_004495721.1 90 FVCEICNKGFQRDQNLQLHRRGH 112 89*******************88 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 166 | 188 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + XP_004495721.1 166 WKCDKCSKKYAVQSDWKAHSKIC 188 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 9.07E-7 | 89 | 112 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 89 | 112 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 90 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 90 | 112 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.5E-5 | 90 | 112 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 92 | 112 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 131 | 161 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 154 | 187 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 9.07E-7 | 161 | 186 | No hit | No description |
SMART | SM00355 | 150 | 166 | 186 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 530 aa Download sequence Send to blast |
MSNITSCDSG SLSTENNRDV AVKQKPIEIV GQFHSPHSHT STTTTNNNSN GSNTILQPPL 60 KKKRNLPGNP DPSAEVIALS PTTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ 120 RTTTEIRKRV YVCPEPSCVH HNPARALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD 180 WKAHSKICGT KEYKCDCGTI FSRRDSFITH RAFCDALAEE NNKANEGGSI QLISSSLQCQ 240 QPILPSHQIG NVTSSSQLIN RSISDDDHKH PLSSSSLPHH DLISKPFMNN NNITGGGSIF 300 SRSLSSSPSL QLSSNSLNNI FEENGLHLSA ATSPHMSATA LLQKAAQMGA TVSSNSTMTD 360 HKTVANNMAA PLFGVVQQQG HGFMNHYMQS TSQQPHQYNN NSFMNGNGIL SGGVGMNGVD 420 MFNAILDQSK ALSKIIEQNN QSQSNSVGVG GGGSNNNNNV INIGGSKGSG DVMTLDLLGI 480 GGGAHSNFYG GGGAQQQQAA ESAAAADEVW RNWSTKNGGF ESFSATSNIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-32 | 162 | 223 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-32 | 162 | 223 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004495721.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC151426 | 1e-150 | AC151426.32 Medicago truncatula clone mth2-6o22, complete sequence. | |||
GenBank | AC161241 | 1e-150 | AC161241.18 Medicago truncatula clone mth2-193c3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495721.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9LVQ7 | 1e-115 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A1S2XYL9 | 0.0 | A0A1S2XYL9_CICAR; zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
STRING | XP_004495721.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-102 | C2H2 family protein |
Publications ? help Back to Top | |||
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