PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491329.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 311aa MW: 35417.6 Da PI: 6.7522 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.7 | 1e-32 | 166 | 223 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCts++C vkk+vers +dp++v +tYeg+Hnh+ XP_004491329.1 166 EDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCIVKKRVERSYQDPSIVMTTYEGQHNHH 223 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-34 | 150 | 225 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-29 | 158 | 225 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.053 | 160 | 225 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-37 | 165 | 224 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.0E-25 | 166 | 223 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MANENNNNNN NPFYNNNHHD DDELINHTNF SFSQNFQGFD PSHTSFNDYL HGSMDYNTLS 60 KAFDLSCSSP EVISSIDDNT KKSSGGDSSL LGISETPNSS ESSSSNEAEP VVEEDSTKSN 120 KKDKQPKGFQ DGDEKSKKGE KAKKKEKKAR EPRFAFLTKS EIDHLEDGYR WRKYGQKAVK 180 NSPYPRSYYR CTSQKCIVKK RVERSYQDPS IVMTTYEGQH NHHCPATLRG NASTMFSSPS 240 LFASSTSMAP NLHQDFLSQF LPTYTQSDQH FFHQQNLLQT QPQQQQFQLH HDYNGLLQDL 300 LPSTFPGKQD P |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 158 | 226 | 10 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 158 | 226 | 10 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491329.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU424494 | 5e-60 | CU424494.2 Medicago truncatula chromosome 5 clone mth2-103o8, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491329.1 | 0.0 | WRKY transcription factor 71-like | ||||
TrEMBL | A0A1S2XLV3 | 0.0 | A0A1S2XLV3_CICAR; WRKY transcription factor 71-like | ||||
STRING | XP_004491329.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2231 | 34 | 83 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 3e-50 | WRKY DNA-binding protein 71 |