PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | MYB_related | ||||||||
Protein Properties | Length: 239aa MW: 27294.1 Da PI: 6.7138 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.3e-09 | 68 | 91 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W++Ia++++ gRt++++k++w+++l XP_004490843.1 68 WSLIAARLP-GRTANDVKNYWHTHL 91 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.284 | 68 | 91 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 6.44E-7 | 68 | 97 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.36E-6 | 68 | 91 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-11 | 68 | 100 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-6 | 68 | 91 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MANNSIQTLT RLRIVARYHK IQFQSGNNRT ELFHQVVITK DQFVLPESCS VSLIALQVAD 60 EFAMMAIWSL IAARLPGRTA NDVKNYWHTH LRKKTIVSKK EENKEKEKPK ETMKPHEIIK 120 PQPRTFSSHS LWLNGKHNFL KPFMVSNKDG DIAKDSESMV PIGDGGDCST MSAMWWKSLL 180 HVNDDKINEK IGSCSLLQDD PTLELPNLEN FLNEDPSVSD CYWGSNNPCE FDSILDFLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490843.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT573509 | 2e-59 | CT573509.1 Medicago truncatula chromosome 5 clone mth2-40e2, COMPLETE SEQUENCE. | |||
GenBank | FJ199997 | 2e-59 | FJ199997.1 Medicago truncatula MYB transcription factor LAP4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027187978.1 | 1e-126 | transcription factor MYB113, partial | ||||
TrEMBL | A0A3Q7XME5 | 1e-125 | A0A3Q7XME5_CICAR; transcription factor MYB113 | ||||
STRING | XP_004490843.1 | 1e-179 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16722 | 7 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-13 | myb domain protein 113 |