PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490801.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 267aa MW: 29392.6 Da PI: 5.1406 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H XP_004490801.1 108 FSCNYCQRKFFSSQALGGHQNAH 130 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.13E-6 | 106 | 135 | No hit | No description |
PROSITE profile | PS50157 | 11.344 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MKPNIDLEVE AYIEYYEAEV TSQVASNVSS TQETSRNSSI TTNPIDINNH PNLNDISLDL 60 TLNFKNNELL GTSKDSIGLI SVSSTSESSN EPANTVSQTT SATIPRVFSC NYCQRKFFSS 120 QALGGHQNAH KRERTLAKRA MRIGLFSERY ASLASLPLHG SFRSLGIKAH SSMLHGFSPP 180 TISRPFPHEV KNNTRFDDEQ VCVGLPIFVE DEESELLWPG SFRPASGDRE QNFILSGNSG 240 LSFATEVNVN SCVVDIENST PDLTLKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490801.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490801.1 | 0.0 | zinc finger protein 4 | ||||
Refseq | XP_004490802.1 | 0.0 | zinc finger protein 4 | ||||
Swissprot | Q39263 | 2e-42 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A1S2XM76 | 0.0 | A0A1S2XM76_CICAR; zinc finger protein 4 | ||||
STRING | XP_004490800.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1323 | 31 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 2e-44 | zinc finger protein 4 |
Publications ? help Back to Top | |||
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