PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004490274.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 297aa MW: 33431.8 Da PI: 6.6811 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.8 | 1.1e-14 | 117 | 163 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L +++e++k L XP_004490274.2 117 KSHSEAERRRRERINNHLAKLRTLLPNT-----TKTDKASLLGEVIEHVKLL 163 79*************************9.....8***************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.837 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.4E-12 | 117 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-14 | 118 | 182 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-15 | 118 | 172 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.1E-13 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.43E-5 | 127 | 166 | No hit | No description |
CDD | cd04873 | 4.72E-7 | 200 | 272 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MKKEEDQGQC SSQNIKTYEE QVFLQQQNSN HMNMFGRGKR LMFPEVSPIL QTQPLFLVPP 60 TTPSSLLPYT SFFNSRVPIP SSSHTFVGNP YGLIQPEYGS KISAQEMMEA KAVAASKSHS 120 EAERRRRERI NNHLAKLRTL LPNTTKTDKA SLLGEVIEHV KLLKRQTSLI AETSEVPTES 180 DELIVNGGDD QNGKFMIKAS LCCEDRSDLL PDLINTLKSL RLRTLKAEIT TLSGRVKNVL 240 FVTESEDSDY SNGEEQQYAC INSIQEALKA VMEKSTDESI SGNVKRQRTN NIIQYEN |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 122 | 127 | ERRRRE |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004490274.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490274.2 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 2e-77 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A1S2XJG7 | 0.0 | A0A1S2XJG7_CICAR; transcription factor bHLH30-like | ||||
STRING | XP_004490274.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 3e-72 | bHLH family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|