PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489720.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 365aa MW: 41631.3 Da PI: 5.4815

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489720.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.5	4.2e-56	16	143	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtd+e++++yL +kv ++++++ ++i e+d++k+ePwdLpk++k +ek+wyfF++rd+ky+tg+r+nrat+sgyWkatgkdke+++ XP_004489720.1 16 LPPGFRFHPTDDEIITCYLINKVLNSNFSA-TAIGEADLNKCEPWDLPKMAKMGEKDWYFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKG 109 79************************99.88***********999999***********************************97 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kktLvfykgrapkgekt+Wvmhe+rl XP_004489720.1 110 kSNQLVGMKKTLVFYKGRAPKGEKTNWVMHEFRL 143 56677*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-62	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	57.928	16	168	IPR003441	NAC domain
Pfam	PF02365	7.5E-29	17	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MDEPIVLNKV DESLDLPPGF RFHPTDDEII TCYLINKVLN SNFSATAIGE ADLNKCEPWD 60 LPKMAKMGEK DWYFFCQRDR KYPTGTRTNR ATESGYWKAT GKDKEIYKGK SNQLVGMKKT 120 LVFYKGRAPK GEKTNWVMHE FRLDGKFATC NLPKDSKDEW VVSRIFNKSN TEIKKNSFSN 180 LLRINSLSDD LLDFSSLPPL VDPPFSNTIN SPPSSSSKPP PNGNYFPSYL INNNIQNQIP 240 SYNIATNQEN TFSHQPQNQI QIQNSSSQLQ QNMLSNYSYN MQQGNHNNTY IYGLDNKECK 300 MEQFSTNNSM VSVSQDTCLS NDINTDTSSV VSKQEIGRNT TLYEDFECPS SIGPLSNFES 360 LWNDY

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MDEPIVLNKV DESLDLPPGF RFHPTDDEII TCYLINKVLN SNFSATAIGE ADLNKCEPWD  60
LPKMAKMGEK DWYFFCQRDR KYPTGTRTNR ATESGYWKAT GKDKEIYKGK SNQLVGMKKT  120
LVFYKGRAPK GEKTNWVMHE FRLDGKFATC NLPKDSKDEW VVSRIFNKSN TEIKKNSFSN  180
LLRINSLSDD LLDFSSLPPL VDPPFSNTIN SPPSSSSKPP PNGNYFPSYL INNNIQNQIP  240
SYNIATNQEN TFSHQPQNQI QIQNSSSQLQ QNMLSNYSYN MQQGNHNNTY IYGLDNKECK  300
MEQFSTNNSM VSVSQDTCLS NDINTDTSSV VSKQEIGRNT TLYEDFECPS SIGPLSNFES  360
LWNDY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-51	14	174	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-51	14	174	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-51	14	174	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-51	14	174	15	171	NO APICAL MERISTEM PROTEIN
4dul_A	2e-51	14	174	15	171	NAC domain-containing protein 19
4dul_B	2e-51	14	174	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489720.1	0.0	NAC domain-containing protein 87
Swissprot	Q9FK44	1e-112	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A1S2XI62	0.0	A0A1S2XI62_CICAR; NAC domain-containing protein 87
STRING	XP_004489720.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-96	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]