PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004488843.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 314aa MW: 35570.1 Da PI: 8.2547 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.5 | 9.4e-52 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhP+deelv++yL kkv++++ l + +vd++k+ePwd+p+++ + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+++l+ XP_004488843.1 11 LPPGFRFHPRDEELVCDYLMKKVTHSDSLL---MIDVDLNKCEPWDIPEAACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRAILR- 101 79**********************999544...789************7666789**************************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg+lvg++ktLvfy+grapkg+kt+Wvmhe+r+ XP_004488843.1 102 KGSLVGMRKTLVFYQGRAPKGRKTEWVMHEFRI 134 999****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.2 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHSDSLL MIDVDLNKCE PWDIPEAACV 60 GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRAIL RKGSLVGMRK TLVFYQGRAP 120 KGRKTEWVMH EFRIEGPHGP PKISSSKEDW VLCRVFYKNR EIAAKPSMGS CYDDTGSSSL 180 PALMDSYISF DQAQFHADEY EQVPCFSIFS QNQTNPIFNN MEPKLPPYNN NNNNNANTFG 240 GAPNLGNYSL DPLSCDRKVL KAVLTQLSKM ERNNPLNNNN NNNNQSLKGS PSLGEGSSES 300 YLSEVGMPHM WNNY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-49 | 6 | 159 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-49 | 6 | 159 | 12 | 166 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004488843.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ343415 | 0.0 | HQ343415.1 Medicago truncatula NAC1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488843.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-125 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A1S2XIU5 | 0.0 | A0A1S2XIU5_CICAR; NAC domain-containing protein 21/22 | ||||
STRING | XP_004488843.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-120 | NAC domain containing protein 1 |