PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487368.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 236aa MW: 26535 Da PI: 6.3013 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.6e-11 | 84 | 130 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRd++N++f eL ++l ++ + +K +K++ L A + I +L XP_004487368.1 84 KACREKLRRDKLNDRFLELSSVLEPD---KLPKTDKVTLLNDAARVITQL 130 678***********************...******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.83E-12 | 71 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.89 | 79 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.6E-8 | 83 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.93E-7 | 83 | 135 | No hit | No description |
SMART | SM00353 | 4.6E-7 | 85 | 136 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-12 | 86 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MDMDSSAGSS CWLYDYGFDI SVAASDFMAS DSTTAAFTWI PHTNITNPPS SNISLEMEYS 60 LDSTVLENAP SKRLKTESYA SGSKACREKL RRDKLNDRFL ELSSVLEPDK LPKTDKVTLL 120 NDAARVITQL RNEAERLKER NDELREKVKE LKAEKNELRD EKNKLKLDKE KLEQQVRSTT 180 VQQSSFLPNA LAAAKGQTGS HKLMPFIGYP GISMWQFMSP ATVDTSQDHL LRPPVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487368.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142086 | 1e-170 | BT142086.1 Medicago truncatula clone JCVI-FLMt-5A23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487368.1 | 1e-175 | transcription factor bHLH115-like isoform X1 | ||||
Swissprot | Q9C682 | 3e-70 | BH115_ARATH; Transcription factor bHLH115 | ||||
TrEMBL | A0A1S2XFV5 | 1e-174 | A0A1S2XFV5_CICAR; transcription factor bHLH115-like isoform X1 | ||||
STRING | XP_004487368.1 | 1e-175 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14916 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51070.1 | 3e-53 | bHLH family protein |
Publications ? help Back to Top | |||
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