PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004487194.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 286aa MW: 32699.9 Da PI: 8.4787

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487194.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	104.9	1e-32	49	189	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++ e +++ +i+ ++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ XP_004487194.1 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIqklhplID--EfipTLEGEnGICCTHPEKLP-GVSKDGLLRHFFHRPSKAYTTGTRKRRKVHtdedgs 139 799*********9.99*998845543322..22222333336******.555555677**************744446555 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+l+g kk+Lv+y++ +++k+ekt+Wvmh+y+l XP_004487194.1 140 ETRWHKTGKTRPVYV-SGKLKGYKKILVLYTNyrKQKKPEKTNWVMHQYHL 189 788********.999*******6444888899*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.96E-37	43	208	IPR003441	NAC domain
PROSITE profile	PS51005	32.56	49	208	IPR003441	NAC domain
Pfam	PF02365	1.2E-15	50	189	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MTQCSYPENN HSTVIVERRK DSLIRTCPTC GHHIKCHEQA AGIHELPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIQKLHPL IDEFIPTLEG ENGICCTHPE KLPGVSKDGL LRHFFHRPSK 120 AYTTGTRKRR KVHTDEDGSE TRWHKTGKTR PVYVSGKLKG YKKILVLYTN YRKQKKPEKT 180 NWVMHQYHLG NNEEEKEGEL VVSKVFYQTQ PRQCGGSLMK DSSMIFSDKL NGGQDVHEVV 240 NHKNSGFVEY YNTSFISFDQ GEQQHRSSNA QVISHFPVHD GTPFIP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269\|PubMed:18952777, ECO:0000269\|PubMed:22133261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487194.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487194.1	0.0	NAC domain-containing protein 73
Swissprot	O49459	1e-118	NAC73_ARATH; NAC domain-containing protein 73
TrEMBL	A0A1S2XCG5	0.0	A0A1S2XCG5_CICAR; NAC domain-containing protein 73
STRING	XP_004487194.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1228	34	108

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28500.1	1e-108	NAC domain containing protein 73

Publications ? help Back to Top
Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE CressExpress: a tool for large-scale mining of expression data from Arabidopsis. Plant Physiol., 2008. 147(3): p. 1004-16 [PMID:18467456] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195] Jervis J, et al. A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood. Phytochemistry, 2015. 115: p. 112-20 [PMID:25771508]