PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NF-YC | ||||||||
Protein Properties | Length: 223aa MW: 25757.1 Da PI: 5.0466 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 152.2 | 9.7e-48 | 71 | 172 | 2 | 100 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflv 93 l++fw++q ie+++++ nh lPlarikk++k+de+v+misae+Pvl++kace+fi+e+t+rsw hae n+++t++ksdia+a+++td+fdflv XP_004486310.1 71 LENFWINQnheIEESNNLGNHCLPLARIKKVMKSDEQVSMISAEVPVLFAKACEMFIMEMTMRSWAHAEMNQKKTIQKSDIASAISSTDVFDFLV 165 899***999999*********************************************************************************** PP NF-YC 94 divprde 100 divpr+e XP_004486310.1 166 DIVPREE 172 *****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 3.26E-29 | 58 | 164 | IPR009072 | Histone-fold |
Pfam | PF00808 | 3.8E-19 | 93 | 155 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 9.9E-34 | 93 | 170 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MNQKRQEEEE EGNEETQSES ESKQIVAISR PLIQTPGASA FSCYLNRDKL PKYFRHSILQ 60 QQKQQELKKK LENFWINQNH EIEESNNLGN HCLPLARIKK VMKSDEQVSM ISAEVPVLFA 120 KACEMFIMEM TMRSWAHAEM NQKKTIQKSD IASAISSTDV FDFLVDIVPR EEDTMDHEIF 180 RRRESVPYYY VPLPPHHAAP PGMFMGTPEL LPNPNQENGD SSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 1e-42 | 76 | 170 | 1 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486310.1 | 1e-168 | nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q9SMP0 | 8e-52 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1S2XCU1 | 1e-166 | A0A1S2XCU1_CICAR; nuclear transcription factor Y subunit C-2-like | ||||
STRING | XP_004486310.1 | 1e-167 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 7e-48 | nuclear factor Y, subunit C4 |
Publications ? help Back to Top | |||
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