PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004485591.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C2H2 | ||||||||
Protein Properties | Length: 792aa MW: 88033.1 Da PI: 5.0932 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.1 | 0.00014 | 343 | 366 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+++F k+ + +H+ + H XP_004485591.1 343 FECHKCSMTFDEKDAYLQHLLSiH 366 89******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50982 | 9.99 | 210 | 282 | IPR001739 | Methyl-CpG DNA binding |
SuperFamily | SSF54171 | 1.41E-7 | 216 | 265 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.890.10 | 1.9E-4 | 219 | 264 | IPR001739 | Methyl-CpG DNA binding |
PROSITE profile | PS50157 | 8.974 | 343 | 371 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.027 | 343 | 366 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 345 | 366 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.37 | 390 | 412 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.642 | 390 | 417 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 392 | 412 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 792 aa Download sequence Send to blast |
MKDEEEQKST VKMDLLSFID STTLSQSELH ALSLSSLTTF DLTSTRQTVT PKIDPSIFNH 60 SSGSYRQTYS RPRRRCRVAP LLPTPSLPSD HRVIVDYLKQ FIREDPKFDQ VELLQPTITS 120 PPVIFAGGER KRKRGRKPKV KVHLDECYRG MEIVNKNGVV IDLAALSNAE DLFAGELARR 180 TEGLSGEEEL LGFLSDLVGQ WGSRRRKRRI VDAADFGDVL PLGWKLLLSL KRKDGRAWIY 240 CRRYISPRGQ QFVSCKEVSS YLQSLFGQPD LQLQISHRSE NVLQEQRVTA ENSAGVIREE 300 QDQRQIVATN SDVSGLSVSN ERLKEIALLE MENLADVQIH DLFECHKCSM TFDEKDAYLQ 360 HLLSIHQRTT RRYRLGSSVG DGVIMKDGKF ECQFCHKVFL ERRRYNGHVG IHVRNYVRKA 420 EDLPGQPNVL RQDKSPVREE MPSRISKMDA LIEIAQNSIM EDSVMEPYCS SKLNTIPVSD 480 IAGGDLDEEL NVESPINEWQ MEENSIGKND SPSLPMDGTV EEIDEDNQVV DAKMFSFLDN 540 TCLLSVNKQN VDAPDTSNGQ CDVALTVEGF DHSGIDLRGV SQSPLLPLSG NHMIPGSEKS 600 ESSGRTYTKG HLKLDGDNSN KSGLKIGLDG CKDVPVVANV QVTAMPASKE NVVQSRVCNF 660 SVSPEQSLDS FSAFSSDKGF QELRLEDIGS LEYDFASVQG SLDVSTDLAH SIVVQGTCAS 720 SAQSALQEVM LNVDERNQLT TVCVWCGIEF NHDAVNSELQ SDSVGFMCPA CKAKISGQIN 780 VLDSGSPNAG HI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 137 | ERKRKRGRKP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004485591.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC169124 | 0.0 | AC169124.2 Medicago truncatula chromosome 2 BAC clone mte1-34m3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004485591.1 | 0.0 | uncharacterized protein LOC101489448 | ||||
Refseq | XP_004485592.1 | 0.0 | uncharacterized protein LOC101489448 | ||||
TrEMBL | A0A1S2X9F9 | 0.0 | A0A1S2X9F9_CICAR; uncharacterized protein LOC101489448 | ||||
STRING | XP_004485590.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5810 | 17 | 19 |