PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031803-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 242aa MW: 26717.5 Da PI: 4.4253 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42 | 2.3e-13 | 3 | 47 | 8 | 55 |
AP2 8 wdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g WALNUT_00031803-RA 3 RHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 47 7888*******99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.448 | 1 | 55 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-15 | 3 | 57 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-15 | 3 | 56 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-20 | 3 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.5E-9 | 3 | 47 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.48E-13 | 3 | 57 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-6 | 67 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-5 | 67 | 94 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MCRHHHNGRW EARIGRVFGN KYLYLGTYAT QEEAAAAYDM AAIEYRGLNA VTNFDLSRYI 60 KWLRPATQEE AAAAYDMAAI EYRGLNAVTN FDLSRYIKWL RPGNQNSPTN PNDSEPNTNL 120 EPGLSLVSNQ AANSSTTATD MTLADPVLRP RPGAGGSASS ALELLFQSSK FKEMLETTSV 180 VDSSPPTSQE SEPPRRSFPD DIQTYFDCQD SGNLYAESED IIFGDLNSIA SVPIFDCEHL 240 GP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847549.1 | 1e-133 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
TrEMBL | A0A2I4GUH3 | 1e-132 | A0A2I4GUH3_JUGRE; AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 | ||||
STRING | XP_009615687.1 | 9e-74 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.2 | 2e-25 | ARIA-interacting double AP2 domain protein |