PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00031353-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family SBP
Protein Properties Length: 369aa    MW: 40893.1 Da    PI: 8.209
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00031353-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.7e-41183259278
                         -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         CqvegC+ dls ak+yhr+h+vCe hsk+p+v+v gle rfCqqCsrfh+lsefDe+krsCrrrL++hn+rrrk+q+
  WALNUT_00031353-RA 183 CQVEGCNLDLSLAKDYHRKHRVCESHSKSPKVIVGGLELRFCQQCSRFHSLSEFDEKKRSCRRRLSDHNARRRKPQP 259
                         **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.7E-33176244IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.163180257IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.36E-39181262IPR004333Transcription factor, SBP-box
PfamPF031101.8E-32183256IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MSSVLLMEWS EKSPSQWEWE NLFVCNAKAN ENSKLQPIEW AMQADQGINP GCFYSSGGGG  60
SDPDLGHASL SNSFKSASVD SYSIGESKTS KLTLETFRDF PKDFHRKKKL AKVETNGTSP  120
TLELPSGSGE PLLSLKLGKL MYSEDACVGN STETSKFSLT SMSSATAAKK CKSSCQSTQT  180
LHCQVEGCNL DLSLAKDYHR KHRVCESHSK SPKVIVGGLE LRFCQQCSRF HSLSEFDEKK  240
RSCRRRLSDH NARRRKPQPE AVHLNPARLS SSIYDGKQQM NLVFDRVPLV YTSASVSSTW  300
EDICSSKFTQ TKEYPLKPEK TSDTDIQLHF PRNEMPCAIT AICDDSSRLL SSKGTVGEVL  360
NPGLFLSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-271832561184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238255KKRSCRRRLSDHNARRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018805983.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
RefseqXP_018805985.10.0PREDICTED: squamosa promoter-binding-like protein 12 isoform X1
TrEMBLA0A2I4DFQ20.0A0A2I4DFQ2_JUGRE; squamosa promoter-binding-like protein 12 isoform X1
STRINGXP_010278483.11e-135(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46303058
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43270.31e-52squamosa promoter binding protein-like 2