PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00031197-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | C2H2 | ||||||||
Protein Properties | Length: 229aa MW: 25866.3 Da PI: 7.0831 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23 | 2e-07 | 10 | 31 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H WALNUT_00031197-RA 10 FCDICGKGFKRDANLRMHMRAH 31 6*******************99 PP | |||||||
2 | zf-C2H2 | 11.3 | 0.001 | 95 | 118 | 1 | 23 |
EEETTTT.EEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCg.ksFsrksnLkrHirtH 23 y+C+ C+ ksFs +Lk+H++ + WALNUT_00031197-RA 95 YSCNRCNkKSFSVVADLKNHLKHC 118 99*******************977 PP | |||||||
3 | zf-C2H2 | 12.9 | 0.00032 | 126 | 142 | 5 | 21 |
TTTEEESSHHHHHHHHH CS zf-C2H2 5 dCgksFsrksnLkrHir 21 Cg+sFsrk+ L H+ WALNUT_00031197-RA 126 TCGTSFSRKDKLFGHMA 142 6**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.86E-6 | 6 | 34 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 2.8E-6 | 9 | 31 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.0017 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 12.196 | 9 | 36 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 57 | 90 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 13 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 230 | 123 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MELLVEHIHF CDICGKGFKR DANLRMHMRA HGNQYKTAEA LAKPERHRAD PCLNTRFSCP 60 YEGCNRNRLH KKFRPLKSVT CAKNHFKRSH CPKMYSCNRC NKKSFSVVAD LKNHLKHCGE 120 ARWRCTCGTS FSRKDKLFGH MALFEGHMPA VGDEDERAKD LAEAAAVTAM DEDENEDEEE 180 DVVMVKGGEL TPENSSDNGF FDGLLDGFSS IESFCLRDVL GSPIGFDGL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018852799.1 | 1e-171 | PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like, partial | ||||
Swissprot | Q943I6 | 2e-73 | STOP1_ORYSJ; Zinc finger protein STOP1 homolog | ||||
TrEMBL | A0A2I4H9H6 | 1e-170 | A0A2I4H9H6_JUGRE; protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like | ||||
STRING | cassava4.1_009526m | 1e-107 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6855 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 2e-74 | C2H2 family protein |
Publications ? help Back to Top | |||
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