PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00030919-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family WRKY
Protein Properties Length: 355aa    MW: 38308.7 Da    PI: 9.5443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00030919-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.11.3e-31283340359
                         -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh+
  WALNUT_00030919-RA 283 DDYSWRKYGQKPIKGSPHPRGYYKCSSLrGCPARKHVERALDDPTMLVVTYEGEHNHS 340
                         99************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105335.0E-16233279IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.4E-33271340IPR003657WRKY domain
PROSITE profilePS5081130.458276342IPR003657WRKY domain
SuperFamilySSF1182908.37E-27279340IPR003657WRKY domain
SMARTSM007745.9E-38281341IPR003657WRKY domain
PfamPF031066.3E-27283339IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MAVELMMGCG GGDGFSGKIE EDALAVKEAA SAGIQSVEKL MRLISQEQYQ QGQATADSTS  60
TSNKASMELG AVADVTVDKF QKVISLLDRR RIGHARFRRA PVSLAPASDL PVQLNEETKH  120
PLSHHLKTEP VSAFKVYCPT PTPVVRLPPL PNNHSHLPPH MGAKNIGSVE RKDAVSSITF  180
SPSPPISAAN SFVSTLTGDT ESLQPSLSSG FHITHMSQVS SAGKPPLSSC SLKRRCNSMD  240
DAAVLKCGSS PARCHCSKKR KSKVKRVIRV PAISPKMADI PPDDYSWRKY GQKPIKGSPH  300
PRGYYKCSSL RGCPARKHVE RALDDPTMLV VTYEGEHNHS NSLTEATAAH VLESS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20269339271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807589.10.0PREDICTED: probable WRKY transcription factor 7
SwissprotQ9STX01e-103WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA0A2I4DKA90.0A0A2I4DKA9_JUGRE; probable WRKY transcription factor 7
STRINGXP_008452579.11e-157(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-74WRKY DNA-binding protein 7