PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00029093-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | ERF | ||||||||
Protein Properties | Length: 170aa MW: 18335.5 Da PI: 5.0355 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 19 | 69 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr++k +g+Wv+eIr+p g + r +lg+f t+e Aa a++ a +l+g WALNUT_00029093-RA 19 KKYKGVRQRK-WGKWVSEIRVP---G-SqERLWLGSFATPEAAAVARDVAYYCLRG 69 59*******9.**********8...4.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.05E-24 | 19 | 79 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-25 | 20 | 79 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.061 | 20 | 79 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.7E-27 | 20 | 85 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.71E-18 | 20 | 79 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.9E-8 | 20 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-9 | 21 | 32 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.6E-9 | 43 | 59 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MSCSEERGAN TGASTSQQKK YKGVRQRKWG KWVSEIRVPG SQERLWLGSF ATPEAAAVAR 60 DVAYYCLRGS STLDNLNFPL MLPSGVRPGL SPRSVQKAAS DAGLAIDAQL IANKLPENEG 120 LKDDKSGHVG AHGLETGCWE LAGDNCGTWE GSELKEGDDQ AFSICIEDYI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-15 | 16 | 85 | 1 | 69 | ATERF1 |
3gcc_A | 2e-15 | 16 | 85 | 1 | 69 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018811455.1 | 1e-124 | PREDICTED: ethylene-responsive transcription factor ERF020-like | ||||
Swissprot | Q9C9I8 | 1e-39 | ERF20_ARATH; Ethylene-responsive transcription factor ERF020 | ||||
TrEMBL | A0A2I4DWE7 | 1e-122 | A0A2I4DWE7_JUGRE; ethylene-responsive transcription factor ERF020-like | ||||
STRING | XP_008219092.1 | 5e-59 | (Prunus mume) | ||||
STRING | POPTR_0013s10420.1 | 4e-59 | (Populus trichocarpa) | ||||
STRING | EMJ27894 | 4e-59 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5489 | 30 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71520.1 | 5e-42 | ERF family protein |
Publications ? help Back to Top | |||
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