PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00028850-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family GRAS
Protein Properties Length: 420aa    MW: 46920.6 Da    PI: 5.4111
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00028850-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS289.87.3e-89184131373
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsP 89 
                         l++lLl+cA a++s+d +laq++++ l++ as+ gdp+qRl++ +++AL +r +r ++  +++  +s+ +     + +++++l  ++++ P
  WALNUT_00028850-RA  18 LEKLLLHCASALESNDVTLAQQVMWVLNNVASSVGDPNQRLTSWLLRALISRASRVCPAAMNIDGSSTIQ----RRLMSVTELagYVDLIP 104
                         5799***************************************************666666544333333....33333344466****** PP

                GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                         +++f++ + N+aIl+a++g  rvHi+Df+i++++QWp+L++aL++Rpegpp+lRiT+ +s  ++    + ++ee+g rL +fA++ +vpfe
  WALNUT_00028850-RA 105 WHRFGFCASNSAILKAIQGVPRVHILDFSITHCMQWPTLIDALSKRPEGPPTLRITVPSSRPPVpplLNVSTEEVGLRLGNFAKSRDVPFE 195
                         *********************************************************9998877999999********************* PP

                GRAS 178 fnvl.....................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveq 244
                         f+v+                       + l  l++++L+++ +Eal++n+++ lh+l de+  +++    rd +++++k l+P+++vvv++
  WALNUT_00028850-RA 196 FHVFdnspsctvpdeilckgapsfhFDSLLGHLNPSMLNLRDDEALVINCQHWLHYLSDEEKGIPQgasLRDIFINTIKALNPQIIVVVDE 286
                         ***********9999999998887444477889****************************999988779********************* PP

                GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                         ++d++++s+  r++ +++y +  fd+le+ lp++s++ri +E   +g +i+n+++ eg++r+er e+  k ++r ++aG +++p+ e+++k
  WALNUT_00028850-RA 287 DSDLSASSLTSRITTCFNYLWIPFDALETFLPKDSSQRIEYESD-IGHKIENIISYEGFQRIERLESCIKLSQRWKNAGCTSIPFCEETVK 376
                         ********************************************.********************************************** PP

                GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         ++++ll +++  g+ ++ e++ lvl+Wk+++ v+++ W
  WALNUT_00028850-RA 377 EVRALLDEHA-GGWGMKREEDMLVLTWKGHNSVFATTW 413
                         **********.7789999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.5791395IPR005202Transcription factor GRAS
PfamPF035142.5E-8618413IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MNSEGIHLSL RSLDGGCLEK LLLHCASALE SNDVTLAQQV MWVLNNVASS VGDPNQRLTS  60
WLLRALISRA SRVCPAAMNI DGSSTIQRRL MSVTELAGYV DLIPWHRFGF CASNSAILKA  120
IQGVPRVHIL DFSITHCMQW PTLIDALSKR PEGPPTLRIT VPSSRPPVPP LLNVSTEEVG  180
LRLGNFAKSR DVPFEFHVFD NSPSCTVPDE ILCKGAPSFH FDSLLGHLNP SMLNLRDDEA  240
LVINCQHWLH YLSDEEKGIP QGASLRDIFI NTIKALNPQI IVVVDEDSDL SASSLTSRIT  300
TCFNYLWIPF DALETFLPKD SSQRIEYESD IGHKIENIIS YEGFQRIERL ESCIKLSQRW  360
KNAGCTSIPF CEETVKEVRA LLDEHAGGWG MKREEDMLVL TWKGHNSVFA TTWVPNGLED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-521941688475Protein SHORT-ROOT
5b3h_B6e-531941634421Protein SHORT-ROOT
5b3h_E6e-531941634421Protein SHORT-ROOT
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810428.10.0PREDICTED: scarecrow-like protein 32
TrEMBLA0A2I4DTF90.0A0A2I4DTF9_JUGRE; scarecrow-like protein 32
STRINGcassava4.1_029854m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-111GRAS family protein