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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
WALNUT_00028417-RA |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family |
BBR-BPC |
Protein Properties |
Length: 336aa MW: 37263.1 Da PI: 9.9742 |
Description |
BBR-BPC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
WALNUT_00028417-RA | genome | JHU | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GAGA_bind | 397.2 | 2.3e-121 | 1 | 336 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yyepa..aslkenl..glqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllal 84
mdd g+re r+k+ +y+ a + l +++ +q+m ++aerda+i+ernlalsekkaa+aerdmaflqrd+a+aern+a++erdn++++l
WALNUT_00028417-RA 1 MDDGGHREngRHKAdQYKTAqgQWLMQHQpsMKQIMGLMAERDAAIQERNLALSEKKAAIAERDMAFLQRDTAIAERNNAFLERDNAIATL 91
9*****999*****9**9554444444431135********************************************************** PP
GAGA_bind 85 llvensla...salpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrak.kpkekkakkkkk 169
+++ensl+ +++p+g+q+++g+k+i++ qq+++ p++++ ++++re+++++al i++ a+ea ++++ k+++++k p kka+k k
WALNUT_00028417-RA 92 QYRENSLTsgnMSCPPGCQISRGVKHIHHPQQHTHhlPHMGEASYNTREMHTTDALAISQVASEAAKSRRAKRTKETKgMPSDKKASKSPK 182
*****99888899*******************76669***********************9998888877775544431344444333322 PP
GAGA_bind 170 ksekskkkvkkesader..........................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaC 234
k + + ++ +k sk+++k dl+ln+v++D+st+P+PvCsCtG+lrqCYkWGnGGWqS+C
WALNUT_00028417-RA 183 KIKRESDDLNKI----MfgkthewkggqdmggggddlnrqsggSKSDWKGPDLGLNQVAFDDSTMPAPVCSCTGILRQCYKWGNGGWQSSC 269
222222332222....0233356899***************************************************************** PP
GAGA_bind 235 CtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
Cttt+S+yPLP+++++r++R++grKmS++af klL++LaaeG+dlsnpvDLkdhWAkHGtn+++ti+
WALNUT_00028417-RA 270 CTTTMSMYPLPAVPNKRHTRVGGRKMSGSAFAKLLSRLAAEGHDLSNPVDLKDHWAKHGTNRYITIK 336
******************************************************************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0005730 | Cellular Component | nucleolus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 336 aa
Download sequence Send
to blast |
MDDGGHRENG RHKADQYKTA QGQWLMQHQP SMKQIMGLMA ERDAAIQERN LALSEKKAAI 60 AERDMAFLQR DTAIAERNNA FLERDNAIAT LQYRENSLTS GNMSCPPGCQ ISRGVKHIHH 120 PQQHTHHLPH MGEASYNTRE MHTTDALAIS QVASEAAKSR RAKRTKETKG MPSDKKASKS 180 PKKIKRESDD LNKIMFGKTH EWKGGQDMGG GGDDLNRQSG GSKSDWKGPD LGLNQVAFDD 240 STMPAPVCSC TGILRQCYKW GNGGWQSSCC TTTMSMYPLP AVPNKRHTRV GGRKMSGSAF 300 AKLLSRLAAE GHDLSNPVDL KDHWAKHGTN RYITIK
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Functional Description ? help
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Source |
Description |
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |