PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00028267-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 291aa MW: 33064 Da PI: 6.9016 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.8 | 3.8e-18 | 82 | 134 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++++LAk lgL+ rq+ +WFqNrRa++k WALNUT_00028267-RA 82 KKRLNLEQVKALEKSFELGNKLEPERKTQLAKALGLQPRQIAIWFQNRRARWK 134 4568889*********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 128.6 | 2.6e-41 | 80 | 172 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+ eqvk+LE+sFe +kLeperK++la++Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el WALNUT_00028267-RA 80 EKKKRLNLEQVKALEKSFELGNKLEPERKTQLAKALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDALHAQNKKLNAEL 170 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ WALNUT_00028267-RA 171 SA 172 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 70 | 138 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.908 | 76 | 136 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.9E-18 | 79 | 140 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.33E-16 | 81 | 137 | No hit | No description |
Pfam | PF00046 | 2.3E-15 | 82 | 134 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-19 | 84 | 143 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.7E-6 | 107 | 116 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 111 | 134 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.7E-6 | 116 | 132 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.5E-14 | 136 | 175 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MIFSNDMAFP SSHSFMFQTH EDQDHLPSSN TLPSCPPQQY YHGGVPFLMN RSMSFSGIDN 60 KCGEVHGDDE LSDDGTQIGE KKKRLNLEQV KALEKSFELG NKLEPERKTQ LAKALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYEVLKKQFE ALKADNDALH AQNKKLNAEL SALKSSDTNE 180 VGLKNMKKET ECSWSNGSEN SCDINLDISR TPAVMNGPVS SRLSSKHIFP SCIRPTASMS 240 QLLQGSSRSS DLQCLKTDQM TQDAGFSNMF NGIEDQHNFW PWPEQHQQHF H |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 136 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018847501.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HAT7-like | ||||
Swissprot | Q00466 | 3e-85 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A2I4GUC4 | 0.0 | A0A2I4GUC4_JUGRE; homeobox-leucine zipper protein HAT7-like | ||||
STRING | EOY03414 | 1e-142 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 1e-87 | homeobox 3 |