PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00027827-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family AP2
Protein Properties Length: 773aa    MW: 85424.2 Da    PI: 7.3013
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00027827-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.72.5e-12405461155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  WALNUT_00027827-RA 405 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 461
                         78*******************77776664346655.77******************98 PP
2AP2452.8e-14519568355
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  WALNUT_00027827-RA 519 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 568
                         9***************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.17E-19405469No hitNo description
PfamPF008471.5E-9405461IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-14405471IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-12406470IPR001471AP2/ERF domain
SMARTSM003802.1E-22406475IPR001471AP2/ERF domain
PROSITE profilePS5103217.359406469IPR001471AP2/ERF domain
PRINTSPR003679.9E-5407418IPR001471AP2/ERF domain
PRINTSPR003679.9E-5451471IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-17517577IPR016177DNA-binding domain
CDDcd000189.55E-25517578No hitNo description
PROSITE profilePS5103219.282518576IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-18518576IPR001471AP2/ERF domain
SMARTSM003808.3E-34518582IPR001471AP2/ERF domain
PfamPF008471.3E-9519568IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 773 aa     Download sequence    Send to blast
MCILGGFYGL ELGSGVILDP GFKKKAKSRR EVRGKAKDVV FLIYTDPYGM KGCSPALFAN  60
DIRRTCECEK EKEREREREG KKMKSMHDNN GSNNNWLGFS LSPQMKMEVT TDPQHHQHQY  120
HHQGQASSAA VSGSIPTGYY LSSHLNSSGI CYVVGENGGF HSPLSVMPLK SDGSLCIMEA  180
LTRSQPEGMV SSPSPKLEDF LGGASMGTHE YGSHEREAMA LSLDSIYYNQ NAEAETSREH  240
SLDLLQEPFR QQDQQIPVQS HQYYTGLPCH GIYQQHLEQE SKETHISDCD SQIPQISEDG  300
IPCLKNWVSR QYSAHHSLGQ QMGNNMVDDG GASGSVGAMG CGDLQSLSLS MSPGSQSSCV  360
TAARQISPNG LECGALETRK RGPGKVAQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE  420
AHLWDNSCKK EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL ENYQVELEEM  480
KNMSRQEYYS TALFSRLYTQ AFPLTCRKSS GFSRGASMYR GVTRHHQHGR WQARIGRVAG  540
NKDLYLGTFS TQEEAAEAYD VAAIKFRGVN AVTNFDITRY DVERIMASST LLAGELARRN  600
KDPEPRTEAI DYNPSVQNVG EETNHPENDN GNGPDWKMVL YPSPQQTPNA CVESLDHHQK  660
TMSSVNYRNA SFSMALQDLI GVDSVNSSQA MVDNSGKLGT HFSNPSSLVT SLSSSREVSP  720
DKTGSTMLFA KPPSGSKFVS PAAGVSSWFP TAQLRPGAIS MAHLPVFAAW TDT
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018810432.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2I4DTF70.0A0A2I4DTF7_JUGRE; AP2-like ethylene-responsive transcription factor ANT
STRINGEOY156530.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-120AP2 family protein