PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024701-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 438aa MW: 47937.8 Da PI: 5.8116 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 30.7 | 5.8e-10 | 247 | 294 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq WALNUT_00024701-RA 247 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 294 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.93E-10 | 241 | 298 | No hit | No description |
SuperFamily | SSF47459 | 6.54E-17 | 241 | 312 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.618 | 243 | 293 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-17 | 243 | 310 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-7 | 247 | 294 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.3E-9 | 249 | 299 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
MNRALPEMSH CLNGPGNCTD MNVLERQRAR MRWQQSYFGG CDSGGVFLEP SQANQVGNFQ 60 DLVVGGGGCS VLDDVVTHSV KPDPGLENGW LELGRLELPK LGFGSGGSMN GSPTGLEMNS 120 SISKTSSCPP TEAQSAPEAK GKVSVPAEKM SSAAGRDSSK KRKADKMQNT KVFAEDNAKD 180 KRSKACAEEG ESKINTEQAR TKNNTSTPTT NNRETSADSS KENSKASEVQ KPDYIHVRAR 240 RGQATDSHSL AERVRREKIS ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL 300 SMKLAAVNPR LDFNIDDFFA KETIPACSAD FPTIGLSSEM TNPAYLQFNP VQQVVACCGF 360 EMGLNSPDMA LRRSLSAPVS LPEPYLDASC FTQLQPPPTW DADLQNLLNL EFHQERSISF 420 PYQPFTGSIE ASNLKMEI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018818185.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
Refseq | XP_018857591.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
Refseq | XP_018858813.1 | 0.0 | PREDICTED: transcription factor bHLH63-like | ||||
TrEMBL | A0A2I4EFM1 | 0.0 | A0A2I4EFM1_JUGRE; transcription factor bHLH63-like | ||||
STRING | XP_010088933.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3618 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 8e-68 | cryptochrome-interacting basic-helix-loop-helix 1 |