PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | WALNUT_00024618-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
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Family | bHLH | ||||||||
Protein Properties | Length: 290aa MW: 32566.9 Da PI: 5.6227 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 49.8 | 6.1e-16 | 47 | 96 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+l+P++ ++K + a+ L ++++Y+++Lq WALNUT_00024618-RA 47 RSKHSVTEQRRRSKINERFQILRDLVPHS----DQKRDTASFLLEVIDYVQYLQ 96 899*************************9....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.44E-18 | 44 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.7E-22 | 44 | 117 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.24 | 45 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.33E-15 | 47 | 100 | No hit | No description |
Pfam | PF00010 | 2.6E-13 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.9E-12 | 51 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MRTGKGNQED EYEEEEFSSK KDGTSSTDKD NTSNKDAKDN DKATAIRSKH SVTEQRRRSK 60 INERFQILRD LVPHSDQKRD TASFLLEVID YVQYLQEKLQ KYEGSCQGWS SEPTKLMPWR 120 NSHWRVQSFV GHPQTNGSSL GSTFPGKFDE NNVSMTPTML TSTQKARESD PSRDINCKPI 180 DRLPEFANEG SPLPMALQAN MPPSVRGDGV LALPLQGPVS DAHTTEFPMI CETLNQQDLI 240 IEGGTISISS VYSHGWDHEN PPSGHQEMAH LRDAGSSRED SDQAQKRLKT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018860393.1 | 0.0 | PREDICTED: transcription factor BIM2-like | ||||
Swissprot | Q9CAA4 | 6e-90 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A2I4HW80 | 0.0 | A0A2I4HW80_JUGRE; transcription factor BIM2-like | ||||
STRING | EMJ23764 | 1e-123 | (Prunus persica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1730 | 33 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 7e-81 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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