PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00024568-RA
Organism
Juglans regia
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family ERF
Protein Properties Length: 214aa    MW: 22426.8 Da    PI: 4.7274
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00024568-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174393155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        + y+GVr+++ +g+Wv+eIr+p+    +  r++lg+f t+e+Aa a++ a  +l+g
  WALNUT_00024568-RA 43 PVYRGVRRRS-TGKWVSEIREPR----KpNRIWLGTFPTPEMAAVAYDVAVIALKG 93
                        68*****887.9*********94....478********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-104393IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-2744104IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-1844103IPR016177DNA-binding domain
PROSITE profilePS5103222.0144102IPR001471AP2/ERF domain
SMARTSM003801.2E-2944108IPR001471AP2/ERF domain
PRINTSPR003673.8E-84556IPR001471AP2/ERF domain
CDDcd000184.70E-2745104No hitNo description
PRINTSPR003673.8E-86783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MKHYSQSATN TSSSSSSGGS SGASGSIASV TAGAAPPTRG RHPVYRGVRR RSTGKWVSEI  60
REPRKPNRIW LGTFPTPEMA AVAYDVAVIA LKGQDTDQLN FPNSASSLPV PASTSPRDIQ  120
AAAASAAAAL GAAAAAMGAA KDASTANEGD GTQKALEPER PVFDEFVDED LIFDMPNVLV  180
NMAEGMLLSP PRLDVAGDDD ENTHDQDQNL WKFP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13421041274Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018812674.11e-155PREDICTED: ethylene-responsive transcription factor ERF024-like
SwissprotQ9SJR01e-52ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A2I4DZU51e-154A0A2I4DZU5_JUGRE; ethylene-responsive transcription factor ERF024-like
STRINGcassava4.1_031718m4e-82(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.13e-51ERF family protein